IsoCor
IsoCor corrects mass spectrometry (MS) data for naturally occurring isotopes to generate corrected isotopologue distributions and mean enrichment values for quantitative isotopic analyses.
Key Features:
- Isotopic correction: Adjusts raw MS mass fractions for naturally occurring isotopes of all elements.
- Tracer purity handling: Accounts for the purity of the isotopic tracer when computing corrections.
- Isotopologue outputs: Produces isotopologue distributions representing relative fractions of molecules differing by isotopic substitutions.
- Mean enrichment calculation: Computes mean enrichment values reflecting average isotopic content within metabolites.
- Resolution support: Applies to both low- and high-resolution MS datasets, including HRMS, with correction of isotopic species resolved from tracer isotopologues.
- Advanced algorithm (v2): Implements a novel correction algorithm to process any chemical species with any isotopic tracer across varying MS resolutions.
Scientific Applications:
- Isotope-resolved metabolomics: Enables accurate correction of labeling data for metabolite isotopologue analysis.
- Systems biology: Provides quantitative isotopic measurements for pathway and flux investigations in systems biology.
- Synthetic biology: Supports quantitative tracer analyses in synthetic biology experiments.
- Metabolic and biochemical studies: Facilitates measurement of tracer incorporation and isotopic enrichment in biochemical processes.
Methodology:
Computationally corrects raw MS data by adjusting mass fractions for naturally occurring isotopes of all elements while accounting for isotopic tracer purity, computes isotopologue distributions and mean enrichment, and applies a novel correction algorithm to handle any chemical species and isotopic tracer across varying MS resolutions including HRMS-resolved isotopic species.
Topics
Details
- License:
- GPL-3.0
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- command-line tool, desktop application, library
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- Python
- Added:
- 1/21/2020
- Last Updated:
- 11/3/2025
Operations
Publications
Millard P, Delépine B, Guionnet M, Heuillet M, Bellvert F, Létisse F. IsoCor: isotope correction for high-resolution MS labeling experiments. Bioinformatics. 2019;35(21):4484-4487. doi:10.1093/bioinformatics/btz209. PMID:30903185.
Documentation
Downloads
- Source codeVersion: 2https://github.com/MetaSys-LISBP/IsoCor