IsoCor

IsoCor corrects mass spectrometry (MS) data for naturally occurring isotopes to generate corrected isotopologue distributions and mean enrichment values for quantitative isotopic analyses.


Key Features:

  • Isotopic correction: Adjusts raw MS mass fractions for naturally occurring isotopes of all elements.
  • Tracer purity handling: Accounts for the purity of the isotopic tracer when computing corrections.
  • Isotopologue outputs: Produces isotopologue distributions representing relative fractions of molecules differing by isotopic substitutions.
  • Mean enrichment calculation: Computes mean enrichment values reflecting average isotopic content within metabolites.
  • Resolution support: Applies to both low- and high-resolution MS datasets, including HRMS, with correction of isotopic species resolved from tracer isotopologues.
  • Advanced algorithm (v2): Implements a novel correction algorithm to process any chemical species with any isotopic tracer across varying MS resolutions.

Scientific Applications:

  • Isotope-resolved metabolomics: Enables accurate correction of labeling data for metabolite isotopologue analysis.
  • Systems biology: Provides quantitative isotopic measurements for pathway and flux investigations in systems biology.
  • Synthetic biology: Supports quantitative tracer analyses in synthetic biology experiments.
  • Metabolic and biochemical studies: Facilitates measurement of tracer incorporation and isotopic enrichment in biochemical processes.

Methodology:

Computationally corrects raw MS data by adjusting mass fractions for naturally occurring isotopes of all elements while accounting for isotopic tracer purity, computes isotopologue distributions and mean enrichment, and applies a novel correction algorithm to handle any chemical species and isotopic tracer across varying MS resolutions including HRMS-resolved isotopic species.

Topics

Details

License:
GPL-3.0
Maturity:
Mature
Cost:
Free of charge
Tool Type:
command-line tool, desktop application, library
Operating Systems:
Linux, Windows, Mac
Programming Languages:
Python
Added:
1/21/2020
Last Updated:
11/3/2025

Operations

Publications

Millard P, Delépine B, Guionnet M, Heuillet M, Bellvert F, Létisse F. IsoCor: isotope correction for high-resolution MS labeling experiments. Bioinformatics. 2019;35(21):4484-4487. doi:10.1093/bioinformatics/btz209. PMID:30903185.

PMID: 30903185
Funding: - ENZINVIVO: ANR-16-CE11-0022 - European Union: ANR-17-COBI-0003-05

Documentation

API documentation', 'Command-line options', 'FAQ', 'Installation instructions', 'User manual
https://isocor.readthedocs.io/en/latest/

Downloads

Links

Repository
https://github.com/MetaSys-LISBP/IsoCor
(GitHub repository)
Repository
https://pypi.org/project/IsoCor/
(PyPi repository)
Repository
https://anaconda.org/bioconda/isocor
(Bioconda repository)