KRASi

KRASi profiles temporal proteomic responses to KRAS G12C inhibition to identify adaptive mechanisms and inform drug-combination strategies.


Key Features:

  • Comprehensive Proteomic Profiling: Quantifies 10,805 proteins across pancreatic and lung cancer models in two-dimensional (2D) and three-dimensional (3D) cellular environments.
  • Mass Spectrometry-Based Quantitative Temporal Proteomics: Applies mass spectrometry-based quantitative temporal proteomics to capture dynamic changes in protein abundance over time.
  • Bioinformatics Workflow: Employs advanced bioinformatics workflows to analyze complex proteomic datasets and detect patterns of adaptation.
  • Identification of Adaptive Pathways: Identifies acute and long-term mechanisms of adaptation in KRAS G12C-driven tumors from temporal proteomic data.
  • Prediction of Drug Combinations: Predicts drug combinations to overcome resistance to KRAS G12C inhibitors, highlighting combinations with PI3K, HSP90, CDK4/6, and SHP2 inhibitors that can convert cytostatic into cytotoxic responses.

Scientific Applications:

  • Resistance Mechanism Elucidation: Dissects proteomic adaptations underlying resistance to KRAS G12C-targeted therapies.
  • Combination Therapy Design: Informs selection of combination treatments to enhance efficacy and durability against KRAS G12C-driven cancers.

Methodology:

Mass spectrometry-based quantitative temporal proteomics and advanced bioinformatics workflows.

Topics

Details

Tool Type:
web application
Operating Systems:
Mac, Linux, Windows
Programming Languages:
R
Added:
11/14/2019
Last Updated:
12/14/2020

Operations

Publications

Santana-Codina N, Chandhoke AS, Yu Q, Małachowska B, Kuljanin M, Gikandi A, Stańczak M, Gableske S, Jedrychowski MP, Scott DA, Aguirre AJ, Fendler W, Gray NS, Mancias JD. Defining and targeting adaptations to oncogenic KRAS<sup>G12C</sup>inhibition using quantitative temporal proteomics. Unknown Journal. 2019. doi:10.1101/769703.