LGE
LGE software analyzes fibrotic scarring in non-ischemic dilated cardiomyopathy using late gadolinium-enhanced cardiac magnetic resonance images. The tool constructs 2D electrophysiological simulation models from the MRI scans, assigning microstructures to areas of late gadolinium enhancement to model fibrotic scarring details below the scan resolution. Simulated electrical stimulation tests the models for transmural block or reentry, and the results are compared with morphological features extracted from the images.
The analysis shows that models exhibiting block or reentry differ significantly in myocardial-LGE interface length, number of components, and entropy but not in relative area and transmurality. Transmurality alone best predicts block, while a combination of interface length, transmurality, and number of components best predicts reentry when the microstructure is unknown.
Topic
MRI;Medical imaging;Biophysics
Detail
Operation: Nucleic acid thermodynamic property calculation;Simulation analysis;Modelling and simulation
Software interface: Command-line interface
Language: Python
License: Not stated
Cost: Free of charge
Version name: -
Credit: National Institute for Health Research Biomedical Research Centre, Guy’s and St. Thomas’ Trust, King’s College, Centre of Excellence in Medical Engineering, Welcome Trust, Engineering and Physical Sciences Research Council, National Institute of Health Research Imperial Biomedical Research Centre, Royal Brompton Hospital Cardiovascular Research Centre, British Heart Foundation, Medical Research Council, and Welcome Trust.
Input: -
Output: -
Contact: Brian P. Halliday b.halliday@rbht.nhs.uk ,Martin J. Bishop martin.bishop@kcl.ac.uk
Collection: -
Maturity: -
Publications
- Scar shape analysis and simulated electrical instabilities in a non-ischemic dilated cardiomyopathy patient cohort.
- Balaban G, et al. Scar shape analysis and simulated electrical instabilities in a non-ischemic dilated cardiomyopathy patient cohort. Scar shape analysis and simulated electrical instabilities in a non-ischemic dilated cardiomyopathy patient cohort. 2019; 15:e1007421. doi: 10.1371/journal.pcbi.1007421
- https://doi.org/10.1371/JOURNAL.PCBI.1007421
- PMID: 31658247
- PMC: PMC6837623
Download and documentation
Source: https://github.com/GabrielBalabanResearch/lgemri_scar_metrics
Documentation: https://github.com/GabrielBalabanResearch/lgemri_scar_metrics/blob/master/README.md
Home page: https://github.com/GabrielBalabanResearch/lgemri_scar_metrics
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