Laniakea

Laniakea deploys and manages on-demand Galaxy instances on public and private cloud infrastructures to provide customizable and secure computational environments for bioinformatics workflows and analyses.


Key Features:

  • Administrative Control: Users obtain full administrative privileges on private Galaxy instances enabling data privacy, customization, job prioritization, tool development, and training activities.
  • Cloud Infrastructure Support: Supports deployment across public and private e-infrastructures and common cloud architectures.
  • Deployment Modes: Enables single-server or cluster-backed Galaxy instances for scalable and robust workflow execution.
  • Data Management and Security: Provides data volume encryption and sharing of reference data across multiple instances.
  • Deployment Technologies: Supports VM image-based, Docker-based, and Ansible recipe-based Galaxy deployments.
  • Automation: Automates provisioning and orchestration of virtual hardware and software components for Galaxy instances.
  • Integration: Leverages the INDIGO-DataCloud software stack for deployment and management operations.

Scientific Applications:

  • Customized Galaxy environments: Enables project-specific toolsets and configurations when public Galaxy instances are insufficient.
  • Privacy-sensitive and clinical research: Supports enhanced data privacy requirements for clinical and sensitive datasets.
  • Food safety: Has been applied in use cases within food safety research requiring tailored analysis environments.
  • Laniakea@ReCaS deployment: The ELIXIR-IT Laniakea@ReCaS installation provides approximately 18 Galaxy on-demand virtual servers with ~100 CPUs, ~250 GB RAM, and ~5 TB storage for research projects.

Methodology:

Automated provisioning of virtual hardware and software components using the INDIGO-DataCloud software stack, implemented via VM images, Docker containers, and Ansible recipes.

Details

License:
GPL-3.0
Maturity:
Mature
Tool Type:
api, workflow
Added:
3/6/2020
Last Updated:
11/24/2024

Operations

Publications

Tangaro MA, Donvito G, Antonacci M, Chiara M, Mandreoli P, Pesole G, Zambelli F. Laniakea: an open solution to provide Galaxy “on-demand” instances over heterogeneous cloud infrastructures. GigaScience. 2020;9(4). doi:10.1093/gigascience/giaa033. PMID:32252069. PMCID:PMC7136032.

PMID: 32252069
PMCID: PMC7136032
Funding: - European Commission: 653549, 857650

Tangaro MA, Mandreoli P, Chiara M, Donvito G, Antonacci M, Parisi A, Bianco A, Romano A, Bianchi DM, Cangelosi D, Uva P, Molineris I, Nosi V, Calogero RA, Alessandri L, Pedrini E, Mordenti M, Bonetti E, Sangiorgi L, Pesole G, Zambelli F. Laniakea@ReCaS: exploring the potential of customisable Galaxy on-demand instances as a cloud-based service. BMC Bioinformatics. 2021;22(S15). doi:10.1186/s12859-021-04401-3. PMID:34749633. PMCID:PMC8574934.

PMID: 34749633
PMCID: PMC8574934
Funding: - Horizon 2020 Framework Programme: 653549, 824087, 857650

Documentation

Links

Related Tools

galaxy
Relation: uses