Lipase reclassification
Lipase reclassification classifies bacterial lipolytic enzymes into an expanded family- and subfamily-level framework to enable accurate sequence-based assignment and comparative analysis.
Key Features:
- Comprehensive classification: Builds on Arpigny and Jaeger (1999) and updates from Kovacic et al. (2019) to define 35 enzyme families and 11 true lipase subfamilies.
- Integration of novel enzymes: Employs sequence-based comparison methods to integrate newly discovered lipolytic enzymes that were previously unclassifiable into the expanded classification.
- Representative reference sequences: Defines representative protein sequences for each family and subfamily to enable precise comparison and assignment of novel enzymes.
Scientific Applications:
- Biotechnological innovation: Supports identification of lipolytic enzymes for enzyme engineering and industrial applications.
- Enhanced enzymology research: Enables accurate classification of novel lipolytic enzymes to advance studies in microbial metabolism and enzymology.
- Comparative and evolutionary analyses: Provides reference sequences for comparative analyses across bacterial species to investigate functional diversity and evolutionary relationships.
Methodology:
Sequence-based comparison of novel enzyme sequences against defined representative reference proteins to assign enzymes to the expanded families and subfamilies.
Topics
Details
- License:
- Unlicense
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- command-line tool
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- Python
- Added:
- 8/9/2019
- Last Updated:
- 6/16/2020
Operations
Publications
Hitch TCA, Clavel T. A proposed update for the classification and description of bacterial lipolytic enzymes. Unknown Journal. 2019. doi:10.7287/peerj.preprints.27725v1.