Lipase reclassification

Lipase reclassification classifies bacterial lipolytic enzymes into an expanded family- and subfamily-level framework to enable accurate sequence-based assignment and comparative analysis.


Key Features:

  • Comprehensive classification: Builds on Arpigny and Jaeger (1999) and updates from Kovacic et al. (2019) to define 35 enzyme families and 11 true lipase subfamilies.
  • Integration of novel enzymes: Employs sequence-based comparison methods to integrate newly discovered lipolytic enzymes that were previously unclassifiable into the expanded classification.
  • Representative reference sequences: Defines representative protein sequences for each family and subfamily to enable precise comparison and assignment of novel enzymes.

Scientific Applications:

  • Biotechnological innovation: Supports identification of lipolytic enzymes for enzyme engineering and industrial applications.
  • Enhanced enzymology research: Enables accurate classification of novel lipolytic enzymes to advance studies in microbial metabolism and enzymology.
  • Comparative and evolutionary analyses: Provides reference sequences for comparative analyses across bacterial species to investigate functional diversity and evolutionary relationships.

Methodology:

Sequence-based comparison of novel enzyme sequences against defined representative reference proteins to assign enzymes to the expanded families and subfamilies.

Topics

Details

License:
Unlicense
Maturity:
Mature
Cost:
Free of charge
Tool Type:
command-line tool
Operating Systems:
Linux, Windows, Mac
Programming Languages:
Python
Added:
8/9/2019
Last Updated:
6/16/2020

Operations

Publications

Hitch TCA, Clavel T. A proposed update for the classification and description of bacterial lipolytic enzymes. Unknown Journal. 2019. doi:10.7287/peerj.preprints.27725v1.

Documentation

Links