LncBook
LncBook curates a high-quality, expert-annotated collection of human long noncoding RNAs (lncRNAs) with integrated multi-omics annotations to support functional characterization and disease association studies.
Key Features:
- Expert curation: Provides an expert-reviewed collection of human lncRNA genes and entries.
- Multi-omics integration: Integrates expression profiles, DNA methylation patterns, and genetic variation data for each lncRNA.
- Functional annotation: Includes curated information on predicted and reported functional roles of lncRNAs.
- Disease associations: Documents associations between lncRNAs and human diseases derived from curated evidence.
- Systematic curation process: Employs a structured, systematic approach to generate comprehensive annotations across omics levels.
- Complementarity: Serves as an expert-driven complement to LncRNAWiki for lncRNA annotation resources.
Scientific Applications:
- lncRNA annotation: Standardizes and enriches annotations for human lncRNA genes to aid genomic studies.
- Functional characterization: Supports investigation of lncRNA functional roles using integrated expression and methylation data.
- Disease association studies: Facilitates discovery and prioritization of lncRNAs implicated in human diseases through curated variation and association data.
- Resource integration and benchmarking: Enables comparison and complementing of community-curated resources such as LncRNAWiki.
Methodology:
Expert-driven systematic curation integrating multi-omics datasets—expression profiles, DNA methylation, genetic variation—and curated functional and disease association information.
Topics
Details
- License:
- CC-BY-4.0
- Cost:
- Free of charge
- Tool Type:
- web application
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- Python
- Added:
- 11/14/2019
- Last Updated:
- 11/24/2024
Operations
Publications
Ma L, Cao J, Liu L, Li Z, Shireen H, Pervaiz N, Batool F, Raza RZ, Zou D, Bao Y, Abbasi AA, Zhang Z. Community Curation and Expert Curation of Human Long Noncoding RNAs with LncRNAWiki and LncBook. Current Protocols in Bioinformatics. 2019;67(1). doi:10.1002/cpbi.82. PMID:31524988.
DOI: 10.1002/cpbi.82
PMID: 31524988