MIMIC-CXR
MIMIC-CXR provides a large, de-identified dataset of chest radiographs paired with semi-structured radiology reports for training and evaluating computer vision, natural language processing, and clinical data mining methods.
Key Features:
- Dataset composition: 227,835 imaging studies from 65,379 patients collected at Beth Israel Deaconess Medical Center Emergency Department between 2011 and 2016, comprising 377,110 de-identified images.
- Image views: Studies may include one or more images, typically frontal and lateral views.
- Radiology reports: Semi-structured free-text reports authored contemporaneously by practicing radiologists are paired with each imaging study.
- Labels: Includes labeled chest radiographs suitable for supervised learning and algorithm evaluation.
- De-identification: Images and reports are de-identified to remove protected health information while preserving diagnostic content.
Scientific Applications:
- Computer vision: Development and evaluation of automated chest radiograph interpretation algorithms and machine learning models.
- Natural language processing: Extraction of structured information from semi-structured free-text radiology reports.
- Clinical data mining: Investigation of imaging-derived and report-derived features for clinical research and phenotype extraction.
Methodology:
Training and evaluation of supervised machine learning and computer vision models on labeled radiographs; application of natural language processing to semi-structured radiology reports; de-identification of images and reports.
Topics
Details
- Tool Type:
- command-line tool
- Added:
- 1/14/2020
- Last Updated:
- 12/28/2020
Operations
Publications
Johnson AEW, Pollard TJ, Berkowitz SJ, Greenbaum NR, Lungren MP, Deng C, Mark RG, Horng S. MIMIC-CXR, a de-identified publicly available database of chest radiographs with free-text reports. Scientific Data. 2019;6(1). doi:10.1038/s41597-019-0322-0. PMID:31831740. PMCID:PMC6908718.