MIMIC-CXR

MIMIC-CXR provides a large, de-identified dataset of chest radiographs paired with semi-structured radiology reports for training and evaluating computer vision, natural language processing, and clinical data mining methods.


Key Features:

  • Dataset composition: 227,835 imaging studies from 65,379 patients collected at Beth Israel Deaconess Medical Center Emergency Department between 2011 and 2016, comprising 377,110 de-identified images.
  • Image views: Studies may include one or more images, typically frontal and lateral views.
  • Radiology reports: Semi-structured free-text reports authored contemporaneously by practicing radiologists are paired with each imaging study.
  • Labels: Includes labeled chest radiographs suitable for supervised learning and algorithm evaluation.
  • De-identification: Images and reports are de-identified to remove protected health information while preserving diagnostic content.

Scientific Applications:

  • Computer vision: Development and evaluation of automated chest radiograph interpretation algorithms and machine learning models.
  • Natural language processing: Extraction of structured information from semi-structured free-text radiology reports.
  • Clinical data mining: Investigation of imaging-derived and report-derived features for clinical research and phenotype extraction.

Methodology:

Training and evaluation of supervised machine learning and computer vision models on labeled radiographs; application of natural language processing to semi-structured radiology reports; de-identification of images and reports.

Topics

Details

Tool Type:
command-line tool
Added:
1/14/2020
Last Updated:
12/28/2020

Operations

Publications

Johnson AEW, Pollard TJ, Berkowitz SJ, Greenbaum NR, Lungren MP, Deng C, Mark RG, Horng S. MIMIC-CXR, a de-identified publicly available database of chest radiographs with free-text reports. Scientific Data. 2019;6(1). doi:10.1038/s41597-019-0322-0. PMID:31831740. PMCID:PMC6908718.

PMID: 31831740
PMCID: PMC6908718
Funding: - U.S. Department of Health & Human Services | National Institutes of Health: NIH-R01-EB017205