ML Repo
ML Repo provides curated classification and regression microbiome datasets to support benchmarking and development of machine learning models for human microbiome research.
Key Features:
- Curated Datasets: Hosts 33 curated classification and regression tasks derived from 15 published human microbiome studies.
- Benchmarking Support: Provides a diverse array of tasks and datasets for testing, validating, and refining machine learning algorithms on high-dimensional microbiome data.
Scientific Applications:
- Algorithm Benchmarking: Enables comparative evaluation and benchmarking of machine learning models on human microbiome classification and regression tasks.
- Algorithm Development: Facilitates development and validation of machine learning methods tailored to microbiome-derived high-dimensional datasets.
- Interdisciplinary Research: Supports collaboration between computational scientists and microbiome domain experts through shared curated tasks.
Methodology:
Careful selection and curation of microbiome datasets into representative classification and regression tasks.
Topics
Details
- License:
- MIT
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- web application
- Operating Systems:
- Linux, Windows, Mac
- Added:
- 8/9/2019
- Last Updated:
- 4/22/2021
Operations
Publications
Vangay P, Hillmann BM, Knights D. Microbiome Learning Repo (ML Repo): A public repository of microbiome regression and classification tasks. GigaScience. 2019;8(5). doi:10.1093/gigascience/giz042. PMID:31042284. PMCID:PMC6493971.
Links
Repository
https://github.com/knights-lab/MLRepoIssue tracker
https://github.com/knights-lab/MLRepo/issues