ML Repo

ML Repo provides curated classification and regression microbiome datasets to support benchmarking and development of machine learning models for human microbiome research.


Key Features:

  • Curated Datasets: Hosts 33 curated classification and regression tasks derived from 15 published human microbiome studies.
  • Benchmarking Support: Provides a diverse array of tasks and datasets for testing, validating, and refining machine learning algorithms on high-dimensional microbiome data.

Scientific Applications:

  • Algorithm Benchmarking: Enables comparative evaluation and benchmarking of machine learning models on human microbiome classification and regression tasks.
  • Algorithm Development: Facilitates development and validation of machine learning methods tailored to microbiome-derived high-dimensional datasets.
  • Interdisciplinary Research: Supports collaboration between computational scientists and microbiome domain experts through shared curated tasks.

Methodology:

Careful selection and curation of microbiome datasets into representative classification and regression tasks.

Topics

Details

License:
MIT
Maturity:
Mature
Cost:
Free of charge
Tool Type:
web application
Operating Systems:
Linux, Windows, Mac
Added:
8/9/2019
Last Updated:
4/22/2021

Operations

Publications

Vangay P, Hillmann BM, Knights D. Microbiome Learning Repo (ML Repo): A public repository of microbiome regression and classification tasks. GigaScience. 2019;8(5). doi:10.1093/gigascience/giz042. PMID:31042284. PMCID:PMC6493971.

PMID: 31042284
PMCID: PMC6493971
Funding: - National Institutes of Health: R01AI121383

Links