MOLGENIS Research

MOLGENIS Research manages, analyzes, visualizes, and shares large-scale genomics, proteomics, metabolomics, and other omics datasets to support biomedical research.


Key Features:

  • Data Management: Provides a platform to collect, store, annotate, and query large-scale biomedical and omics datasets.
  • Analysis Capabilities: Implements analytical functionalities for processing complex biological and omics data.
  • Visualization Tools: Includes visualization options for interpreting omics data and analytical results.
  • Data Sharing: Supports sharing of datasets to enable transparency and collaboration in the research community.

Scientific Applications:

  • Genomics: Supports management, analysis, and visualization of large-scale genomics datasets.
  • Proteomics: Enables storage, analysis, and visualization of proteomics data.
  • Metabolomics: Facilitates handling and interpretation of metabolomics datasets.
  • Other omics disciplines: Applies to additional omics data types for integrated biomedical research.

Methodology:

Provides multiple deployment options including source code installation, a precompiled WAR file, and Docker container setup.

Topics

Details

License:
Other
Maturity:
Mature
Cost:
Free of charge
Tool Type:
web application
Operating Systems:
Linux, Windows, Mac
Programming Languages:
R, Python
Added:
8/4/2019
Last Updated:
11/24/2024

Operations

Publications

van der Velde KJ, Imhann F, Charbon B, Pang C, van Enckevort D, Slofstra M, Barbieri R, Alberts R, Hendriksen D, Kelpin F, de Haan M, de Boer T, Haakma S, Stroomberg C, Scholtens S, van de Geijn G, Festen EAM, Weersma RK, Swertz MA. MOLGENIS research: advanced bioinformatics data software for non-bioinformaticians. Bioinformatics. 2018;35(6):1076-1078. doi:10.1093/bioinformatics/bty742. PMID:30165396. PMCID:PMC6419911.

PMID: 30165396
PMCID: PMC6419911
Funding: - NWO: 184.033.111, 917.164.455

Documentation

Downloads

Links

Other
https://molgenis83.gcc.rug.nl/
(MOLGENIS Research demo application)