MRICloud

MRICloud performs automated neonatal brain MRI parcellation and quantification using Multi-Atlas Label Fusion (MALF) and a T1-weighted neonatal multi-atlas to support structure-specific developmental analyses.


Key Features:

  • Multi-Atlas Label Fusion (MALF): Employs MALF for high-precision brain segmentation and parcellation based on anatomical units.
  • T1-weighted neonatal multi-atlas repository: Utilizes a T1-weighted neonatal multi-atlas repository as the reference set for neonatal-specific labeling and segmentation.
  • Automated parcellation aligned to manual segmentation: Provides fully automated image parcellation that aligns closely with manual segmentation methods.
  • Volume quantification: Quantifies whole and regional brain volumes to assess morphological changes and signal intensity variations.
  • Developmental trajectory analysis: Generates developmental trajectories from regional and whole-brain measures for neonatal developmental assessment.
  • Structure-by-structure analysis: Enables analysis on a structure-by-structure basis to investigate normal and abnormal developmental processes.

Scientific Applications:

  • Developmental neuroscience: Supports investigation of early brain development and morphological changes in neonates.
  • Neonatology: Enables quantitative assessment of neonatal brain structure for clinical and research studies in neonatology.
  • Pediatric neuroradiology: Facilitates detailed regional analysis relevant to diagnosis and monitoring in pediatric neuroradiology.
  • Early diagnosis and intervention research: Supports identification of deviations from typical development to inform early diagnosis and intervention strategies.

Methodology:

The method applies Multi-Atlas Label Fusion (MALF) using a T1-weighted neonatal multi-atlas repository to perform anatomy-based parcellation and quantify whole and regional brain volumes for structure-by-structure analysis.

Topics

Details

License:
Unlicense
Maturity:
Mature
Cost:
Free of charge (with restrictions)
Tool Type:
web application
Operating Systems:
Linux, Windows, Mac
Added:
8/9/2019
Last Updated:
6/16/2020

Operations

Publications

Otsuka Y, Chang L, Kawasaki Y, Wu D, Ceritoglu C, Oishi K, Ernst T, Miller M, Mori S, Oishi K. A Multi‐Atlas Label Fusion Tool for Neonatal Brain MRI Parcellation and Quantification. Journal of Neuroimaging. 2019;29(4):431-439. doi:10.1111/jon.12623. PMID:31037800. PMCID:PMC6609486.

PMID: 31037800
PMCID: PMC6609486
Funding: - National Institute of Health: 2K24DA16170, R01HD065955, U54NS056883

Documentation