MetaMed

MetaMed maps system-wide correlations between microbial functions and medicinal therapeutics to link microbiota activities and metabolites to drug efficacy, side effects, and potential microbe-derived therapeutics.


Key Features:

  • System-Wide Correlation Mapping: Integratively maps correlations between bacterial functions and therapeutic agents across datasets.
  • Hypothesis Generation for Microbe Therapeutics: Generates hypotheses connecting microbial activities and drug responses to identify candidate microbe-based therapeutic mechanisms.
  • Environmental Microbes and Drug Relationships: Analyzes relationships between environmental microbes, microbiota metabolites, and pharmaceuticals to identify metabolites relevant to drug development.

Scientific Applications:

  • Microbiome Research: Investigating the role of human microbiota in health and disease by providing correlation maps between microbial functions and drugs.
  • Clinical Optimization: Supporting studies to minimize adverse drug effects and optimize therapeutic strategies through identified microbe–drug associations.
  • Drug Discovery: Identifying microbiota-derived metabolites with potential pharmaceutical applications for drug discovery and development.

Methodology:

MetaMed employs a novel integrative approach that combines data from various sources to establish correlations between bacterial functions and medicinal therapeutics.

Topics

Details

Tool Type:
command-line tool
Added:
1/9/2020
Last Updated:
12/28/2020

Operations

Publications

Zhao H, Fu S, Yu Y, Zhang Z, Li P, Ma Q, Jia W, Ning K, Qu S, Liu Q. <i>MetaMed</i> : Linking Microbiota Functions with Medicine Therapeutics. mSystems. 2019;4(5). doi:10.1128/msystems.00413-19. PMID:31594829. PMCID:PMC6787565.