MetaMed
MetaMed maps system-wide correlations between microbial functions and medicinal therapeutics to link microbiota activities and metabolites to drug efficacy, side effects, and potential microbe-derived therapeutics.
Key Features:
- System-Wide Correlation Mapping: Integratively maps correlations between bacterial functions and therapeutic agents across datasets.
- Hypothesis Generation for Microbe Therapeutics: Generates hypotheses connecting microbial activities and drug responses to identify candidate microbe-based therapeutic mechanisms.
- Environmental Microbes and Drug Relationships: Analyzes relationships between environmental microbes, microbiota metabolites, and pharmaceuticals to identify metabolites relevant to drug development.
Scientific Applications:
- Microbiome Research: Investigating the role of human microbiota in health and disease by providing correlation maps between microbial functions and drugs.
- Clinical Optimization: Supporting studies to minimize adverse drug effects and optimize therapeutic strategies through identified microbe–drug associations.
- Drug Discovery: Identifying microbiota-derived metabolites with potential pharmaceutical applications for drug discovery and development.
Methodology:
MetaMed employs a novel integrative approach that combines data from various sources to establish correlations between bacterial functions and medicinal therapeutics.
Topics
Details
- Tool Type:
- command-line tool
- Added:
- 1/9/2020
- Last Updated:
- 12/28/2020
Operations
Publications
Zhao H, Fu S, Yu Y, Zhang Z, Li P, Ma Q, Jia W, Ning K, Qu S, Liu Q. <i>MetaMed</i> : Linking Microbiota Functions with Medicine Therapeutics. mSystems. 2019;4(5). doi:10.1128/msystems.00413-19. PMID:31594829. PMCID:PMC6787565.