MicroScope platform
MicroScope is an integrated Web platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis. It supports submissions of newly assembled genomes and metagenomes, and also provides analysis services for RNA-seq data. The user interface of MicroScope enables collaborative work in a rich comparative context to improve community-based curation efforts.
Topics
Collections
Details
- Maturity:
- Mature
- Cost:
- Free of charge (with restrictions)
- Tool Type:
- web application, workflow
- Added:
- 11/5/2019
- Last Updated:
- 6/16/2020
Operations
- Deposition
- Differential gene expression analysis
- Variant calling
- Genome annotation
- Metabolic pathway prediction
- Sequence clustering
- Expression analysis
- Genetic variation analysis
- Genome annotation
- Genome comparison
- Genome visualisation
- Metabolic network modelling
- Network visualisation
- Pathway visualisation
- Analysis
- Gene functional annotation
- Gene prediction
- Pathway analysis
- RNA-Seq analysis
- Sequence alignment
- Sequence alignment analysis
- Database search
- Literature search
- Sequence database search (by property)
- Sequence similarity search
- Genome annotation
- Genome comparison
- Genome visualisation
- Pathway visualisation
- Visualisation
- Data retrieval
Data Inputs & Outputs
Deposition
Differential gene expression analysis
Outputs
Genome annotation
Expression analysis
Data retrieval
Other operations do not define inputs or outputs.
Publications
DOI: 10.1093/bib/bbx113
PMID: 28968784
DOI: 10.1093/nar/gkz926
PMID: 31647104
DOI: 10.1093/nar/gkj406
DOI: 10.1093/nar/gks1194
DOI: 10.1093/nar/gkw1101
Documentation
Links
Social media
https://labgem.genoscope.cns.fr/category/microscope-announce/(Announces related to MicroScope (includes an RSS feed and release notes).)
Helpdesk
https://www.genoscope.cns.fr/agc/microscope/about/contact.php(This form can be used to requests services, support or ask questions.
You can also write to mage@genoscope.cns.fr.)