MoMI-G

MoMI-G is a web-based genome graph browser that allows intuitive recognition of large, nested, and potentially more complex structural variations in genome graphs with structural variants and supporting evidences such as read alignments, read depth, and annotations. It has view modules for different scales, which allow users to view the whole genome down to nucleotide-level alignments of long reads. MoMI-G also has Interval Card Deck, a feature for rapid manual inspection of hundreds of structural variants.

Topic

Variant calling;Genome visualisation;Read mapping;Genome alignment

Detail

  • Operation: Genome browsing; Visualization; Data integration; Structural variation analysis; Read alignment analysis; Data annotation; Manual inspection

  • Software interface: Command-line user inteface

  • Language: TypeScript, JavaScript, CSS, Ruby, Shell, HTML

  • License: MIT License

  • Cost: Free

  • Version name: -

  • Credit: -

  • Input: -

  • Output: -

  • Contact: Toshiyuki T. Yokoyama toshiyuki.t.yokoyama@gmail.com

  • Collection: -

  • Maturity: Stable

Publications

  • MoMI-G: modular multi-scale integrated genome graph browser.
  • Yokoyama TT, et al. MoMI-G: modular multi-scale integrated genome graph browser. MoMI-G: modular multi-scale integrated genome graph browser. 2019; 20:548. doi: 10.1186/s12859-019-3145-2
  • https://doi.org/10.1186/s12859-019-3145-2
  • PMID: 31690272
  • PMC: PMC6833150

Download and documentation

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