NITPicker
NITPicker selects optimal time points or spatial points along a single axis to minimize sampling bias and maximize information about the shape of underlying functional curves for improved experimental design and data interpretation.
Key Features:
- Bias Reduction: Minimizes biases introduced by subjective human selection of sampling points.
- Information Maximization: Chooses time or spatial points to maximize information capture about curve shape while avoiding redundant sampling.
- Functional Data Analysis Integration: Applies principles from functional data analysis to evaluate and prioritize informative sampling locations.
- Versatility Across Applications: Applicable to diverse datasets including longitudinal gene expression studies, weather time-series, and growth curves for follow-up experimental design.
Scientific Applications:
- Longitudinal gene expression studies: Designs sampling schemes to capture temporal dynamics in gene expression.
- Weather and environmental time-series analysis: Identifies informative time points to characterize changes in weather or environmental variables over time.
- Growth curve analysis: Selects sampling points that resolve key phases and transitions in growth curves.
Methodology:
Uses functional data analysis principles to assess underlying data structure and predict the most informative time or spatial points for sampling.
Topics
Details
- License:
- GPL-3.0
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- library
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- R
- Added:
- 5/17/2019
- Last Updated:
- 6/16/2020
Operations
Publications
Ezer D, Keir J. NITPicker: selecting time points for follow-up experiments. BMC Bioinformatics. 2019;20(1). doi:10.1186/s12859-019-2717-5. PMID:30940082. PMCID:PMC6444531.
PMID: 30940082
PMCID: PMC6444531
Funding: - Trinity College, University of Cambridge: NA
- Engineering and Physical Sciences Research Council: EP/S001360/1
- Alan Turing Institute: TU/A/000017