OAC

OAC performs semantic natural language processing of electronic health record text to extract oral anticoagulant prescription patterns and compute CHA2DS2-VASc and HAS-BLED risk scores for atrial fibrillation patients.


Key Features:

  • Natural Language Processing Pipeline: Employs an NLP pipeline to identify risk factors for atrial fibrillation patients by extracting relevant information from discharge summaries.
  • Risk Scoring Calculation: Computes CHA2DS2-VASc and HAS-BLED scores from text-extracted risk factors.
  • Validation Against Experts: Validated calculated scores against two independent clinical experts with average kappa 0.78 for CHA2DS2-VASc and 0.54 for HAS-BLED.
  • Trend Analysis: Analyzes temporal trends demonstrating a significant increase in oral anticoagulant prescriptions among high-risk AF patients linked to guideline changes and the introduction of direct oral anticoagulants (DOACs).
  • Factors Influencing OAC Use: Identifies factors independently associated with OAC use, including components of CHA2DS2-VASc and HAS-BLED, discharging specialty, and patient frailty, with cardiology departments showing the highest OAC rates.

Scientific Applications:

  • Clinical Decision Support: Automates risk score calculations to support anticoagulation decision-making for atrial fibrillation patients.
  • Epidemiological Research: Enables analysis of large EHR datasets to replicate registry findings and study trends in clinical practice.
  • Healthcare Policy Analysis: Provides insights into prescription patterns and risk factor associations to inform guidelines and policy for AF management.

Methodology:

Processes discharge summaries from 1 January 2011 to 1 October 2017 for 10,030 atrial fibrillation patients using an NLP pipeline to extract clinical information, compute CHA2DS2-VASc and HAS-BLED scores, and validate them against two independent clinical expert assessments.

Topics

Details

Tool Type:
command-line tool
Programming Languages:
Python
Added:
1/14/2020
Last Updated:
1/4/2021

Operations

Publications

Bean DM, Teo J, Wu H, Oliveira R, Patel R, Bendayan R, Shah AM, Dobson RJB, Scott PA. Semantic computational analysis of anticoagulation use in atrial fibrillation from real world data. PLOS ONE. 2019;14(11):e0225625. doi:10.1371/journal.pone.0225625. PMID:31765395. PMCID:PMC6876873.

PMID: 31765395
PMCID: PMC6876873
Funding: - Health Data Research UK: MR/S00310X/1, MR/S004149/1 - Medical Research Council: MR/R016372/1 - National Institute for Health Research: IS-BRC-1215-20018 - Innovative Medicines Initiative: 116074

Bean DM, Teo J, Wu H, Oliveira R, Patel R, Bendayan R, Shah AM, Dobson RJB, Scott PA. Semantic computational analysis of anticoagulation use in atrial fibrillation from real world data. Unknown Journal. 2019. doi:10.1101/19011643.