ODAM
ODAM manages experimental data tables and associated metadata to enhance accessibility, interoperability, and reusability of research data in accordance with the FAIR Data principles.
Key Features:
- Data and Metadata Structuring: Provides a comprehensive model for organizing experimental data tables and associated metadata to support standardized representation and analysis.
- FAIR Compliance Facilitation: Encodes practices to make data Findable, Accessible, Interoperable, and Reusable for both humans and machines.
- Experiment Data Table Management System (EDTMS): Functions as an EDTMS for structuring and disseminating experimental datasets aligned with FAIR criteria.
Scientific Applications:
- Design of Experiments (DoE): Illustrates structuring and management of experimental data tables associated with DoE to support discoverability and reuse across scientific domains.
Methodology:
Uses a model for organizing experimental data tables and metadata, illustrated with examples associated with Design of Experiments.
Topics
Details
- License:
- GPL-3.0
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- api, desktop application, web application
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- R, Python
- Added:
- 11/4/2019
- Last Updated:
- 11/24/2024
Operations
Publications
Jacob D, David R, Aubin S, Gibon Y. Making experimental data tables in the life sciences more FAIR: a pragmatic approach. GigaScience. 2020;9(12). doi:10.1093/gigascience/giaa144. PMID:33319910. PMCID:PMC7736789.
PMID: 33319910
PMCID: PMC7736789
Funding: - Agence Nationale de la Recherche: ANR-11-INBS-0010, ANR-11-INBS-0012, ANR-15-CE20–0009-01
Documentation
Installation instructions
http://pmb-bordeaux.fr/odam/ODAM_install_VirtualBox.pdfHow to install a virtual machine embedding the ODAM framework software on Oracle VM VirtualBox
Training material
http://doi.org/10.17504/protocols.io.betcjeiwData Preparation Protocol for ODAM Compliance
General
https://inrae.github.io/ODAM/Presentation of the ODAM software suite, its aims and what can we do with it for what purposes
Downloads
- Container fileVersion: 1.2https://hub.docker.com/r/odam/getdata/docker images
- Software packageVersion: 0.1.8https://cran.r-project.org/package=RodamR package on CRAN : Rodam: Wrapper Functions for 'ODAM' (Open Data for Access and Mining) Web Services
- Source codeVersion: 1.2https://github.com/inrae/ODAMSource code on Github
- VM imageVersion: 4.0https://data.inrae.fr/dataset.xhtml?persistentId=doi:10.15454/C9LAEFVirtual Machine embedding the ODAM framework software on Oracle VM VirtualBox
Links
Software catalogue
https://fairsharing.org/bsg-s001505/(FAIRSharing Standard : "ODAM Structural metadata ")