ODAM

ODAM manages experimental data tables and associated metadata to enhance accessibility, interoperability, and reusability of research data in accordance with the FAIR Data principles.


Key Features:

  • Data and Metadata Structuring: Provides a comprehensive model for organizing experimental data tables and associated metadata to support standardized representation and analysis.
  • FAIR Compliance Facilitation: Encodes practices to make data Findable, Accessible, Interoperable, and Reusable for both humans and machines.
  • Experiment Data Table Management System (EDTMS): Functions as an EDTMS for structuring and disseminating experimental datasets aligned with FAIR criteria.

Scientific Applications:

  • Design of Experiments (DoE): Illustrates structuring and management of experimental data tables associated with DoE to support discoverability and reuse across scientific domains.

Methodology:

Uses a model for organizing experimental data tables and metadata, illustrated with examples associated with Design of Experiments.

Topics

Details

License:
GPL-3.0
Maturity:
Mature
Cost:
Free of charge
Tool Type:
api, desktop application, web application
Operating Systems:
Linux, Windows, Mac
Programming Languages:
R, Python
Added:
11/4/2019
Last Updated:
11/24/2024

Operations

Publications

Jacob D, David R, Aubin S, Gibon Y. Making experimental data tables in the life sciences more FAIR: a pragmatic approach. GigaScience. 2020;9(12). doi:10.1093/gigascience/giaa144. PMID:33319910. PMCID:PMC7736789.

PMID: 33319910
PMCID: PMC7736789
Funding: - Agence Nationale de la Recherche: ANR-11-INBS-0010, ANR-11-INBS-0012, ANR-15-CE20–0009-01

Documentation

Installation instructions
http://pmb-bordeaux.fr/odam/ODAM_install_VirtualBox.pdf
How to install a virtual machine embedding the ODAM framework software on Oracle VM VirtualBox
Training material
http://doi.org/10.17504/protocols.io.betcjeiw
Data Preparation Protocol for ODAM Compliance
General
https://inrae.github.io/ODAM/
Presentation of the ODAM software suite, its aims and what can we do with it for what purposes

Downloads

Links

Software catalogue
https://fairsharing.org/bsg-s001505/
(FAIRSharing Standard : "ODAM Structural metadata ")