PVCTools
PVCTools is a software tool that detects variations in genomic sequences efficiently. As sequencing technology advances, it has become feasible to sequence individuals within a species. However, most existing tools for detecting variations need the ability to run in parallel, which can limit their speed and efficiency.
PVCTools addresses this issue by employing a parallel processing approach. It divides the reference genome and alignment files into smaller segments, allowing for simultaneous analysis of these segments. This parallel processing significantly accelerates the variation detection process. Additionally, PVCTools take into account boundary noise, ensuring accurate results.
Topic
Transcriptomics;Plant biology;Sequencing;Systems biology;Bioinformatics
Detail
Operation: Clustering;Splitting
Software interface: Command-line user interface
Language: C++
License: Not stated
Cost: Free of charge
Version name: -
Credit: The Projects of Parallel Variation Calling Tools, ENCODE of Tobacco Genome, the Young Elite Scientists Sponsorship Program by CAST.
Input: -
Output: -
Contact: Peijian Cao peijiancao@163.com ,Dasha Hu hudasha@scu.edu.cn
Collection: -
Maturity: -
Publications
- PVCTools: parallel variation calling tools.
- Jin J, et al. PVCTools: parallel variation calling tools. PVCTools: parallel variation calling tools. 2019; 5:e02530. doi: 10.1016/j.heliyon.2019.e02530
- https://doi.org/10.1016/J.HELIYON.2019.E02530
- PMID: 31667383
- PMC: PMC6812194
Download and documentation
Documentation: https://github.com/CNaibon/PVCTools/blob/master/README.md
Home page: https://github.com/CNaibon/PVCTools
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