Phobos
Phobos automates detection and quantification of freezing behavior in rodents to measure associative fear memory.
Key Features:
- Automated parameter calibration: Parameters for freezing detection are automatically adjusted following a brief period of manual quantification to optimize detection performance.
- Manual reference quantification: A short manually scored video segment serves as the calibration reference for automated parameter adjustment.
- Freezing detection and quantification: Detects and quantifies episodes of freezing behavior as the primary behavioral output.
- Output format: Analysis results are exported in .xls format.
- Performance and variability: Validation indicates intra- and interuser variability comparable to manual scoring, supporting consistent measurements across users.
Scientific Applications:
- Fear memory assessment: Quantification of freezing as an indicator of associative fear memory in rodents.
- Behavioral neuroscience studies: Automated scoring to support large-scale or high-throughput experiments requiring consistent freezing measurements.
- Reproducibility and precision: Reduction of intra- and interobserver variability for experiments demanding high precision and reproducibility.
Methodology:
Optimization was performed using four distinct video sets to determine relevant detection parameters, establish the number of videos required for calibration, and set minimum criteria for reliable results; performance was validated by comparing outcomes from four different users, showing intra- and interuser variability comparable to manual scoring.
Topics
Details
- License:
- BSD-3-Clause
- Programming Languages:
- MATLAB
- Added:
- 1/9/2020
- Last Updated:
- 1/9/2021
Operations
Data Inputs & Outputs
Quantification
Publications
Amorim FE, Moulin TC, Amaral OB. A Freely Available, Self-Calibrating Software for Automatic Measurement of Freezing Behavior. Frontiers in Behavioral Neuroscience. 2019;13. doi:10.3389/fnbeh.2019.00205. PMID:31572139. PMCID:PMC6753174.
PMID: 31572139
PMCID: PMC6753174
Funding: - Fundação Carlos Chagas Filho de Amparo à Pesquisa do Estado do Rio de Janeiro: E-26/203.222/2017, E-26/201.544/2014