Phobos

Phobos automates detection and quantification of freezing behavior in rodents to measure associative fear memory.


Key Features:

  • Automated parameter calibration: Parameters for freezing detection are automatically adjusted following a brief period of manual quantification to optimize detection performance.
  • Manual reference quantification: A short manually scored video segment serves as the calibration reference for automated parameter adjustment.
  • Freezing detection and quantification: Detects and quantifies episodes of freezing behavior as the primary behavioral output.
  • Output format: Analysis results are exported in .xls format.
  • Performance and variability: Validation indicates intra- and interuser variability comparable to manual scoring, supporting consistent measurements across users.

Scientific Applications:

  • Fear memory assessment: Quantification of freezing as an indicator of associative fear memory in rodents.
  • Behavioral neuroscience studies: Automated scoring to support large-scale or high-throughput experiments requiring consistent freezing measurements.
  • Reproducibility and precision: Reduction of intra- and interobserver variability for experiments demanding high precision and reproducibility.

Methodology:

Optimization was performed using four distinct video sets to determine relevant detection parameters, establish the number of videos required for calibration, and set minimum criteria for reliable results; performance was validated by comparing outcomes from four different users, showing intra- and interuser variability comparable to manual scoring.

Topics

Details

License:
BSD-3-Clause
Programming Languages:
MATLAB
Added:
1/9/2020
Last Updated:
1/9/2021

Operations

Data Inputs & Outputs

Publications

Amorim FE, Moulin TC, Amaral OB. A Freely Available, Self-Calibrating Software for Automatic Measurement of Freezing Behavior. Frontiers in Behavioral Neuroscience. 2019;13. doi:10.3389/fnbeh.2019.00205. PMID:31572139. PMCID:PMC6753174.

PMID: 31572139
PMCID: PMC6753174
Funding: - Fundação Carlos Chagas Filho de Amparo à Pesquisa do Estado do Rio de Janeiro: E-26/203.222/2017, E-26/201.544/2014