PlaSMo
PlaSMo provides a repository for plant systems-biology mathematical models and supports preservation, discovery, and reuse to enable reproducible research in plant systems biology.
Key Features:
- Model Repository: Centralized storage for plant systems-biology mathematical models describing biological processes in plants.
- Data Description and Discovery: Support for metadata-based description and discovery of models to facilitate findability and reuse.
- Preservation and Sustainability: Mechanisms for long-term preservation of models, including migration strategies to alternative publicly funded repositories to ensure continuity and accessibility.
Scientific Applications:
- Model Development: Enables development and refinement of computational and mathematical models of plant biological processes.
- Model Re-use: Facilitates re-use of existing models to accelerate research and reduce duplication of effort.
- Collaborative Research: Supports sharing of models across the plant systems biology community to enable collaborative and reproducible studies.
Methodology:
Data migration of models and associated metadata to an alternative publicly funded repository to ensure long-term preservation and accessibility.
Topics
Details
- License:
- MIT
- Programming Languages:
- JavaScript, Java
- Added:
- 11/14/2019
- Last Updated:
- 1/17/2021
Operations
Publications
Zielinski T, Hay J, Millar AJ. The grant is dead, long live the data - migration as a pragmatic exit strategy for research data preservation. Wellcome Open Research. 2019;4:104. doi:10.12688/wellcomeopenres.15341.2. PMID:31363499. PMCID:PMC6652102.
PMID: 31363499
PMCID: PMC6652102
Funding: - Biotechnology and Biological Sciences Research Council: BB/M018040/1
- Wellcome Trust: 204804