PlaSMo

PlaSMo provides a repository for plant systems-biology mathematical models and supports preservation, discovery, and reuse to enable reproducible research in plant systems biology.


Key Features:

  • Model Repository: Centralized storage for plant systems-biology mathematical models describing biological processes in plants.
  • Data Description and Discovery: Support for metadata-based description and discovery of models to facilitate findability and reuse.
  • Preservation and Sustainability: Mechanisms for long-term preservation of models, including migration strategies to alternative publicly funded repositories to ensure continuity and accessibility.

Scientific Applications:

  • Model Development: Enables development and refinement of computational and mathematical models of plant biological processes.
  • Model Re-use: Facilitates re-use of existing models to accelerate research and reduce duplication of effort.
  • Collaborative Research: Supports sharing of models across the plant systems biology community to enable collaborative and reproducible studies.

Methodology:

Data migration of models and associated metadata to an alternative publicly funded repository to ensure long-term preservation and accessibility.

Topics

Details

License:
MIT
Programming Languages:
JavaScript, Java
Added:
11/14/2019
Last Updated:
1/17/2021

Operations

Publications

Zielinski T, Hay J, Millar AJ. The grant is dead, long live the data - migration as a pragmatic exit strategy for research data preservation. Wellcome Open Research. 2019;4:104. doi:10.12688/wellcomeopenres.15341.2. PMID:31363499. PMCID:PMC6652102.

PMID: 31363499
PMCID: PMC6652102
Funding: - Biotechnology and Biological Sciences Research Council: BB/M018040/1 - Wellcome Trust: 204804

Links