ProtMiscuity
ProtMiscuity catalogs catalytic promiscuity in proteins by providing a manually curated database of experimentally characterized canonical and promiscuous enzyme activities.
Key Features:
- Curated dataset: Manually curated collection encompassing 88 different reactions across 57 proteins from 40 distinct organisms.
- Comprehensive annotations: Entries record canonical and promiscuous activities with reaction substrates, products, and kinetic parameters.
- Active site mapping: Active sites mapped to protein sequences and structures.
- Search and browse: Search and browse by protein name, organism, and descriptions of canonical and promiscuous reactions.
- External resource links: Cross-references to external biological and functional annotation resources.
Scientific Applications:
- Mechanistic investigation: Facilitate exploration of underlying mechanisms of promiscuous catalytic reactions using experimentally derived entries.
- Enzyme function studies: Support analysis of enzyme versatility and adaptability by comparing canonical and promiscuous activities.
- Literature validation and data retrieval: Enable validation of published findings and retrieval of hard-to-find information on catalytic promiscuity.
Methodology:
Manual curation of experimentally derived data, mapping of active sites to protein sequences and structures, and provision of links to external annotation resources.
Topics
Details
- Added:
- 1/9/2020
- Last Updated:
- 12/9/2020
Operations
Publications
Velez Rueda AJ, Palopoli N, Zacarías M, Sommese LM, Parisi G. ProtMiscuity: a database of promiscuous proteins. Database. 2019;2019. doi:10.1093/database/baz103. PMID:31650170. PMCID:PMC6813136.
PMID: 31650170
PMCID: PMC6813136
Funding: - Universidad Nacional de Quilmes: PUNQ 1402/15
- Agencia Nacional de Promociientca y Tecnola: PICT-2014 3430