RNA Workbench 2.0
RNA Workbench 2.0: Integrated RNA Data Analysis Platform
RNA Workbench 2.0 integrates and analyzes RNA-related datasets, including next-generation sequencing data, to support gene expression and regulatory pathway studies.
Key Features:
- Comprehensive RNA Analysis Workflows: Provides tools for RNA-Seq data processing, differential expression analysis, and integration of target prediction results across experimental approaches.
- Containerized Infrastructure: Implements containerization to ensure reproducible, consistent computational environments across platforms.
Scientific Applications:
- Gene Expression and Regulatory Analysis: Supports RNA-Seq–based gene expression profiling, investigation of RNA modifications, integrative multi-layer analyses, and functional target prediction.
Methodology:
Employs containerized workflows to execute RNA-Seq and related RNA analysis tools, enabling standardized processing, integration of heterogeneous RNA datasets, and reproducible computational analyses.
Topics
Details
- License:
- MIT
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- workflow
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- Shell, JavaScript
- Added:
- 8/9/2019
- Last Updated:
- 6/16/2020
Operations
Publications
Fallmann J, Videm P, Bagnacani A, Batut B, Doyle MA, Klingstrom T, Eggenhofer F, Stadler PF, Backofen R, Grüning B. The RNA workbench 2.0: next generation RNA data analysis. Nucleic Acids Research. 2019;47(W1):W511-W515. doi:10.1093/nar/gkz353. PMID:31073612. PMCID:PMC6602469.
DOI: 10.1093/NAR/GKZ353
PMID: 31073612
PMCID: PMC6602469
Funding: - German Federal Ministry of Education and Research: 031 A538A/A538C, 031L0101C, 031L0106
- German Research Foundation: SFB 992/1 2012, SFB 992/2 2016