RNA Workbench 2.0

RNA Workbench 2.0: Integrated RNA Data Analysis Platform

RNA Workbench 2.0 integrates and analyzes RNA-related datasets, including next-generation sequencing data, to support gene expression and regulatory pathway studies.


Key Features:

  • Comprehensive RNA Analysis Workflows: Provides tools for RNA-Seq data processing, differential expression analysis, and integration of target prediction results across experimental approaches.
  • Containerized Infrastructure: Implements containerization to ensure reproducible, consistent computational environments across platforms.

Scientific Applications:

  • Gene Expression and Regulatory Analysis: Supports RNA-Seq–based gene expression profiling, investigation of RNA modifications, integrative multi-layer analyses, and functional target prediction.

Methodology:

Employs containerized workflows to execute RNA-Seq and related RNA analysis tools, enabling standardized processing, integration of heterogeneous RNA datasets, and reproducible computational analyses.

Topics

Details

License:
MIT
Maturity:
Mature
Cost:
Free of charge
Tool Type:
workflow
Operating Systems:
Linux, Windows, Mac
Programming Languages:
Shell, JavaScript
Added:
8/9/2019
Last Updated:
6/16/2020

Operations

Publications

Fallmann J, Videm P, Bagnacani A, Batut B, Doyle MA, Klingstrom T, Eggenhofer F, Stadler PF, Backofen R, Grüning B. The RNA workbench 2.0: next generation RNA data analysis. Nucleic Acids Research. 2019;47(W1):W511-W515. doi:10.1093/nar/gkz353. PMID:31073612. PMCID:PMC6602469.

PMID: 31073612
PMCID: PMC6602469
Funding: - German Federal Ministry of Education and Research: 031 A538A/A538C, 031L0101C, 031L0106 - German Research Foundation: SFB 992/1 2012, SFB 992/2 2016

Documentation

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