ROMOP
ROMOP interfaces with Electronic Health Record (EHR) data formatted according to the Observational Medical Outcomes Partnership (OMOP) Common Data Model (CDM) within the R environment.
Key Features:
- OMOP CDM Data Access and Querying: Provides functions to explore CDM tables, extract and summarize clinical and demographic patient data, and perform patient-level searches using standardized OMOP vocabulary concepts.
- Standardized EHR Data Handling: Enables interoperable analysis of OMOP CDM–structured EHR datasets across institutions and health systems.
Scientific Applications:
- Biomedical EHR-Based Research: Supports analysis of standardized EHR data for studies of patient outcomes, disease patterns, and treatment effects.
Methodology:
ROMOP implements R functions to query, retrieve, and summarize OMOP CDM–formatted EHR tables, leveraging standardized vocabularies and data structures to enable reproducible and interoperable clinical data analysis.
Topics
Details
- License:
- MIT
- Programming Languages:
- R
- Added:
- 1/9/2020
- Last Updated:
- 1/13/2021
Operations
Publications
Glicksberg BS, Oskotsky B, Giangreco N, Thangaraj PM, Rudrapatna V, Datta D, Frazier R, Lee N, Larsen R, Tatonetti NP, Butte AJ. ROMOP: a light-weight R package for interfacing with OMOP-formatted electronic health record data. JAMIA Open. 2019;2(1):10-14. doi:10.1093/jamiaopen/ooy059. PMID:31633087. PMCID:PMC6800657.
PMID: 31633087
PMCID: PMC6800657
Funding: - National Center for Advancing Translational Sciences, National Institutes of Health: UL1 TR001872
Links
Repository
http://github.com/BenGlicksberg/ROMOP