RSAT position-analysis
Detect oligomers (k-mers) whose positional distribution significantly discard from a homogeneous distribution.
Topics
Collections
Details
- License:
- AFL-3.0
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- command-line tool, web application, web service
- Operating Systems:
- Linux, Mac
- Programming Languages:
- Perl
- Added:
- 12/12/2019
- Last Updated:
- 6/16/2020
Operations
Data Inputs & Outputs
Sequence motif discovery
Publications
Documentation
Training material
https://teaching.rsat.eu/tutorials/tut_position-analysis.htmlInstallation instructions
https://rsa-tools.github.io/installing-RSAT/API documentation
http://pedagogix-tagc.univ-mrs.fr/rsat/htmllink.cgi?title=RSAT%20:%20Web%20services%20documentation&file=web_services/RSATWS_documentation.xmlDocumentation for the SOAP/WSDL Web services
Downloads
- Biological datahttps://github.com/rsa-tools/motif_databasesKnow transcription factor binding motifs imported from a wide variety of databases
- Container filehttps://biocontainers.pro/#/tools/rsat-core
- Downloads pagehttp://download.rsat.eu/
- Source codehttps://github.com/rsa-tools/rsat-code.gitTo obtain a git clone, run the command "git clone [this_url]. To get updates, cd to the rsat-code folder and run "git pull".
- Source codehttps://github.com/rsa-tools/rsat-code/releasesCompressed archives for each RSAT release
- Test datahttps://github.com/rsa-tools/demo_filesDemo files
- Test scripthttps://raw.githubusercontent.com/rsa-tools/rsat-code/master/makefiles/subcommand_tests.mk
Links
Service
http://prokaryotes.rsat.eu/position-analysis_form.cgi(Prokaryote-specific RSAT instance – includes Bacteria and Archaea)
Issue tracker
https://github.com/rsa-tools/rsat-code/issuesRelated Tools
rsat
Relation: includedIn