RametrixTM

RametrixTM performs Raman chemometric analysis of urine spectra to define normative spectral ranges and detect deviations associated with kidney and urinary tract diseases.


Key Features:

  • Raman Spectroscopy: Acquisition of urine Raman spectra to capture molecular vibrational signatures from urine specimens.
  • Principal Component Analysis (PCA): Dimensionality reduction of Raman spectral data to highlight variance associated with metabolites such as urea, creatinine, and glucose.
  • Discriminant Analysis of Principal Components (DAPC): Classification of urine samples and construction of predictive models for donor characteristics.
  • Multivariate Statistical Analysis: Statistical exploration of relationships within spectral datasets to assess factors influencing Raman signatures.

Scientific Applications:

  • Establishing Normative Spectral Ranges: Definition of a "range of normal" for urine Raman spectra using 235 urine samples from healthy individuals.
  • Predictive Modeling and Classification: Prediction of donor sex with reported 71% overall accuracy using DAPC models and blind leave-one-out build/test routines.
  • Donor Identification: Association of urine specimens with individual donors with an average reported accuracy of 78%.
  • Assessing Biological Variable Effects: Evaluation of effects on Raman spectra with reported significance for age (p < 0.001), marginal effect for sex (p = 0.0526), and no significant effect for menstrual cycle (p = 0.695).

Methodology:

Raman spectral acquisition followed by Principal Component Analysis (PCA), Discriminant Analysis of Principal Components (DAPC), multivariate statistical analyses, and blind leave-one-out build/test routines.

Topics

Details

Programming Languages:
MATLAB
Added:
11/14/2019
Last Updated:
12/11/2020

Operations

Publications

Senger RS, Kavuru V, Sullivan M, Gouldin A, Lundgren S, Merrifield K, Steen C, Baker E, Vu T, Agnor B, Martinez G, Coogan H, Carswell W, Karageorge L, Dev D, Du P, Sklar A, Orlando G, Pirkle J, Robertson JL. Spectral characteristics of urine specimens from healthy human volunteers analyzed using Raman chemometric urinalysis (Rametrix). PLOS ONE. 2019;14(9):e0222115. doi:10.1371/journal.pone.0222115. PMID:31560690. PMCID:PMC6764656.

PMID: 31560690
PMCID: PMC6764656
Funding: - Center for Innovative Technology: CP15-015-LS