SED
SED predicts ligand bioactivities for G protein-coupled receptors (GPCRs) and identifies key substructures using extended-connectivity fingerprints (ECFPs), Lasso regression, and deep neural networks.
Key Features:
- Lasso-Based Feature Selection on Long ECFPs: Applies Lasso regression to long extended-connectivity fingerprints to select informative substructural features associated with GPCR bioactivity.
- Deep Neural Network Regression: Utilizes selected ECFP features in a deep neural network model to predict ligand bioactivities.
Scientific Applications:
- GPCR Ligand Bioactivity Modeling: Predicts and analyzes bioactivities across multiple human GPCR subfamilies to support virtual screening and drug discovery.
Methodology:
SED represents ligands using long extended-connectivity fingerprints, performs feature selection via Lasso regression to identify key substructures, and trains a deep neural network regression model to estimate GPCR ligand bioactivities.
Topics
Details
- Added:
- 11/14/2019
- Last Updated:
- 12/19/2020
Operations
Publications
Wu J, Liu B, Chan WKB, Wu W, Pang T, Hu H, Yan S, Ke X, Zhang Y. Precise modelling and interpretation of bioactivities of ligands targeting G protein-coupled receptors. Bioinformatics. 2019;35(14):i324-i332. doi:10.1093/bioinformatics/btz336. PMID:31510691. PMCID:PMC6612825.
PMID: 31510691
PMCID: PMC6612825
Funding: - National Science Foundation of China: 61571233, 61872198, 81771478
- Natural Science Foundation of the Higher Education Institutions of Jiangsu Province: 18KJB416005
- key University Science Research Project of Jiangsu Province: 17KJA510003
- Natural Science Foundation of Nanjing University of Posts and Telecommunications: NY218092
- National Science Foundation: DBI1564756