SIAN
SIAN analyzes structural identifiability of ordinary differential equation (ODE) models to determine whether model parameters can be uniquely identified from ideal continuous noise-free data.
Key Features:
- Structural Identifiability Analysis: Performs structural identifiability analysis on ordinary differential equation (ODE) models to assess whether parameters can be uniquely determined.
- Advanced Problem Solving: Addresses complex identifiability issues that were previously unsolvable by other software approaches.
- Implementation: Implemented in Maple, a high-level language and environment for mathematical computation.
Scientific Applications:
- Systems Biology: Evaluates identifiability of ODE models used in systems biology to ensure parameters can be inferred uniquely.
- Pharmacokinetics: Applies to pharmacokinetic ODE models to assess whether model parameters are identifiable for parameter estimation.
- Parameter Estimation for Dynamic Processes: Supports domains requiring precise parameter estimation from dynamic biological processes by identifying non-unique solutions prior to experiments.
Methodology:
Performs a priori analysis of model structure to determine whether unique parameter values can be identified given perfect continuous noise-free data.
Topics
Details
- License:
- Unlicense
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- command-line tool
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- Maple
- Added:
- 7/11/2019
- Last Updated:
- 11/24/2024
Operations
Publications
Hong H, Ovchinnikov A, Pogudin G, Yap C. SIAN: software for structural identifiability analysis of ODE models. Bioinformatics. 2019;35(16):2873-2874. doi:10.1093/bioinformatics/bty1069. PMID:30601937.
PMID: 30601937
Funding: - National Science Foundation: CCF-1319632, CCF-1563942, CCF-1564132, CCF-1708884, DMS-1760448
- National Security Agency: #H98230-18-1-0016
- City University of New York: #60098-00 48, PSC-CUNY #69827-00 47
Documentation
Downloads
- Source codehttps://github.com/pogudingleb/SIAN/releases
Links
Issue tracker
https://github.com/pogudingleb/SIAN/issues