SIAN

SIAN analyzes structural identifiability of ordinary differential equation (ODE) models to determine whether model parameters can be uniquely identified from ideal continuous noise-free data.


Key Features:

  • Structural Identifiability Analysis: Performs structural identifiability analysis on ordinary differential equation (ODE) models to assess whether parameters can be uniquely determined.
  • Advanced Problem Solving: Addresses complex identifiability issues that were previously unsolvable by other software approaches.
  • Implementation: Implemented in Maple, a high-level language and environment for mathematical computation.

Scientific Applications:

  • Systems Biology: Evaluates identifiability of ODE models used in systems biology to ensure parameters can be inferred uniquely.
  • Pharmacokinetics: Applies to pharmacokinetic ODE models to assess whether model parameters are identifiable for parameter estimation.
  • Parameter Estimation for Dynamic Processes: Supports domains requiring precise parameter estimation from dynamic biological processes by identifying non-unique solutions prior to experiments.

Methodology:

Performs a priori analysis of model structure to determine whether unique parameter values can be identified given perfect continuous noise-free data.

Topics

Details

License:
Unlicense
Maturity:
Mature
Cost:
Free of charge
Tool Type:
command-line tool
Operating Systems:
Linux, Windows, Mac
Programming Languages:
Maple
Added:
7/11/2019
Last Updated:
11/24/2024

Operations

Publications

Hong H, Ovchinnikov A, Pogudin G, Yap C. SIAN: software for structural identifiability analysis of ODE models. Bioinformatics. 2019;35(16):2873-2874. doi:10.1093/bioinformatics/bty1069. PMID:30601937.

PMID: 30601937
Funding: - National Science Foundation: CCF-1319632, CCF-1563942, CCF-1564132, CCF-1708884, DMS-1760448 - National Security Agency: #H98230-18-1-0016 - City University of New York: #60098-00 48, PSC-CUNY #69827-00 47

Documentation

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