SINGLe

Accurate consensus sequence from nanopore reads of a DNA gene library. SINGLe corrects for systematic errors in nanopore sequencing reads of gene libraries and it retrieves true consensus sequences of variants identified by a barcode, needing only a few reads per variant.

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Topics

Sequencing Genetic engineering Synthetic biology

Details

License:: MIT
Maturity:: Emerging
Cost:: Free of charge (with restrictions)
Tool Type:: command-line tool
Operating Systems:: Linux, Mac, Windows
Programming Languages:: R
Added:: 9/30/2022
Last Updated:: 9/30/2022

Operations

Read pre-processing
Sequence analysis

Documentation

User manual

https://bioconductor.org/packages/release/bioc/manuals/single/man/single.pdf

Downloads

Software package
https://bioconductor.org/packages/release/bioc/html/single.html

Links

Repository

https://bioconductor.org/packages/release/bioc/html/single.html

Repository

https://github.com/rocioespci/single

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