SLIDE
SLIDE provides interactive multi-resolution visualization and biologically informed querying of large-scale omics and quantitative expression datasets to enable systems-level exploration of raw high-throughput data.
Key Features:
- Interactive multi-resolution visualization: Enables exploration of quantitative expression data across multiple resolutions with real-time customization of graphical views.
- Biologically sensitive queries: Supports biologically sensible query operations to extract meaningful patterns from raw omics data.
- Direct visualization customization: Allows real-time adjustments and customizations of visual representations for focused data inspection.
- Systems-level data exploration: Designed to handle large-scale, high-throughput omics datasets for comprehensive examination beyond conventional post hoc visualization.
Scientific Applications:
- Systems biology analyses: Supports exploration and interpretation of system-level behaviors in omics datasets.
- Discovery of hidden patterns in omics data: Facilitates identification of novel biological insights and patterns not apparent from standard statistical filtering of quantitative expression data.
Methodology:
Integrates interactive visualization with biologically relevant querying capabilities to enable holistic examination of large-scale omics and quantitative expression datasets.
Topics
Details
- License:
- BSD-2-Clause
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- desktop application, web application
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- Java, Python
- Added:
- 7/6/2019
- Last Updated:
- 11/24/2024
Operations
Publications
Ghosh S, Datta A, Tan K, Choi H. SLIDE – a web-based tool for interactive visualization of large-scale – omics data. Bioinformatics. 2018;35(2):346-348. doi:10.1093/bioinformatics/bty534. PMID:29955804. PMCID:PMC6330001.
PMID: 29955804
PMCID: PMC6330001
Funding: - Institute of Molecular and Cell Biology, Agency for Science, Technology and Research, Singapore Ministry of Education: MOE2016-T2-1-001
- Singapore National Medical Research Council: NMRC-CG-M009
Documentation
Links
Issue tracker
https://github.com/soumitag/SLIDE/issues