ST viewer

ST viewer integrates high-resolution imaging with spatially resolved transcriptome-wide sequencing to visualize and analyze Spatial Transcriptomics (ST) datasets and map gene expression within tissue sections.

Key Features:

• Real-Time Interaction: Enables interactive exploration of Spatial Transcriptomics (ST) datasets with immediate feedback for dynamic data inspection.
• Imaging–Sequencing Integration: Integrates high-resolution imaging with spatially resolved transcriptome-wide sequencing to associate spatial coordinates with transcriptomic profiles.
• Comprehensive Visualization: Provides advanced visualization techniques to display spatial gene expression patterns across tissue sections.

Scientific Applications:

• Tissue Architecture Analysis: Visualizes in situ gene expression to study the organization and function of cells within native tissue environments.
• Disease Research: Identifies spatial gene expression patterns relevant to diseases such as cancer, including analysis of tumor microenvironments and metastatic processes.
• Developmental Biology: Enables examination of gene expression during developmental stages to investigate cellular differentiation and organogenesis.

Methodology:

Combines high-resolution imaging with transcriptome-wide sequencing to map transcriptomic data onto tissue sections and provide a spatially resolved view of gene expression.