STaBioM-Standardised-Bioinformatics-for-Microbial-samples

A unified CLI + GUI for running microbiome analysis pipelines on long-read and short-read sequencing data, supporting both 16S amplicon and shotgun metagenomics workflows for all DNA sequencing technologies.

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Topics

Whole genome sequencing Whole genome sequencing

Details

License:: Freeware
Maturity:: Emerging
Cost:: Free of charge
Tool Type:: command-line tool, web application
Operating Systems:: Linux, Mac, Windows
Programming Languages:: Python, R, Shell
Added:: 3/6/2026
Last Updated:: 3/6/2026

Operations

Taxonomic classification

Data Inputs & Outputs

Taxonomic classification

Inputs

Outputs

Documentation

General

https://github.com/izzydavidson/STaBioM-Standardised-Bioinformatics-for-Microbial-samples.git

Downloads

Source code
Version: V1
https://github.com/izzydavidson/STaBioM-Standardised-Bioinformatics-for-Microbial-samples.git
Download whole repo to allow for both CLI and GUI usage

Links

Repository

https://github.com/izzydavidson/STaBioM-Standardised-Bioinformatics-for-Microbial-samples.git

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