SimpleDSFviewer

SimpleDSFviewer analyzes differential scanning fluorimetry (DSF; thermal shift assay) data to compute and visualize protein thermal stability metrics, including melting temperature (Tm), to support studies of protein stability and protein–ligand interactions.


Key Features:

  • Melting Curve Normalization and Smoothing: Performs normalization and smoothing of melting curves to reduce noise and refine signal.
  • Melting Temperature (Tm) Analysis: Determines melting temperature (Tm) from processed DSF data for stability assessment.
  • Visualization: Generates melting curve plots and visual outputs for assessed DSF traces.
  • Matlab Integration: Implemented in Matlab and compatible with the Matlab workspace and Matlab Runtime.

Scientific Applications:

  • Protein Thermal Stability Profiling: Characterizing thermal stability profiles of proteins using DSF-derived melting curves.
  • Protein–Ligand Binding Analysis: Investigating protein–ligand binding dynamics via thermal shift measurements and Tm changes.
  • High-Throughput Screening: Supporting high-throughput screening workflows for identification of potential drug candidates using DSF.

Methodology:

Performs normalization and smoothing of raw DSF melting curves followed by computational determination of Tm; implemented in Matlab and compatible with the Matlab workspace and Matlab Runtime.

Topics

Details

Programming Languages:
MATLAB
Added:
11/14/2019
Last Updated:
11/24/2024

Operations

Publications

Sun C, Li Y, Yates EA, Fernig DG. SimpleDSFviewer: A tool to analyze and view differential scanning fluorimetry data for characterizing protein thermal stability and interactions. Protein Science. 2019;29(1):19-27. doi:10.1002/pro.3703. PMID:31394001. PMCID:PMC6933846.

PMID: 31394001
PMCID: PMC6933846
Funding: - Xinxiang Medical University: 300‐505232