Smart Cancer Predictive System
Smart Cancer Predictive System predicts overall survival in hepatocellular carcinoma by constructing an eight-mRNA prognostic nomogram from mRNA expression data to support precision oncology.
Key Features:
- Prognostic Nomogram Development: An Eight-mRNA prognostic nomogram was developed from 24,991 mRNA expression data points from 348 HCC patients using LASSO Cox regression.
- Biomarker Identification: The nomogram is based on eight mRNAs—N4BP3, ADRA2B, E2F8, MAPT, PZP, HOXD9, COL15A1, and NDST3—selected via multivariate Cox proportional regression analyses.
- Predictive Accuracy: The nomogram achieved a concordance index (C-index) of 0.765 (95% CI 0.724–0.806) for overall survival in the model cohort and a Harrell's C-index of 0.715 (95% CI 0.658–0.772) in the validation cohort.
- Risk Stratification: Patients are stratified into high-risk and low-risk groups based on mRNA expression profiles, with survival curves showing significantly poorer overall survival in the high-risk group.
Scientific Applications:
- Personalized Medicine: Predicts individual mortality risk probabilities to inform personalized treatment regimens for HCC patients.
- Research Utility: Provides prognostic mRNA biomarkers and molecular insights for oncology research and therapeutic target investigation.
- Clinical Decision Support: Supplies prognostic risk estimates to support clinical decision-making and patient management in HCC.
Methodology:
Data collection and preprocessing of mRNA expression data; LASSO Cox regression to identify prognostic mRNAs followed by multivariate Cox proportional regression to construct the Eight-mRNA prognostic nomogram; validation of predictive performance in a separate cohort.
Topics
Details
- Added:
- 1/14/2020
- Last Updated:
- 1/16/2021
Operations
Publications
Zhang Z, Li J, He T, Ouyang Y, Huang Y, Liu Q, Wang P, Ding J. Two predictive precision medicine tools for hepatocellular carcinoma. Cancer Cell International. 2019;19(1). doi:10.1186/s12935-019-1002-z. PMID:31754347. PMCID:PMC6854692.
PMID: 31754347
PMCID: PMC6854692
Funding: - Guangdong Provincial Health Department: A2016450, B2018237