StanEx1
StanEx1 generates and characterizes LexA enhancer trap lines in Drosophila melanogaster to enable analysis of gene- and tissue-specific expression using the LexA-LexAop binary expression system.
Key Features:
- Novel Enhancer Trap Insertions: Nearly 100 novel LexA enhancer traps were generated from the StanEx^1 index line, including 76 insertions at unique gene loci previously unassociated with enhancer traps or targeted LexA constructs.
- Molecular Characterization: Detailed molecular characterization of the novel enhancer trap lines is provided.
- Tissue Expression Analysis: Initial tissue expression analyses were performed to determine tissue-specific expression patterns of the enhancer traps.
- Transposase-Dependent Replacement Events: Evidence was found for selective transposase-dependent replacement events involving a previously undetected KP element on chromosome III during hybrid dysgenesis, contributing to over-representation of LexA insertions at loci such as NK7.1.
Scientific Applications:
- Gene Function Analysis: Provides LexA enhancer traps for manipulating and assessing gene function in Drosophila melanogaster.
- Gene Regulatory Network Mapping: Enables investigation of gene regulatory networks and tissue-specific regulatory elements using LexA-LexAop-driven reporters.
- Tissue-Specific Expression Profiling: Supports analysis of tissue-specific expression patterns during development and in adult organisms.
- Transposition and Insertion Dynamics: Facilitates study of transposase-dependent insertion dynamics and KP element-mediated replacement events during hybrid dysgenesis.
Methodology:
No computational methods were specified in the provided description.
Topics
Details
- License:
- Unlicense
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- web application
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- JavaScript, PHP, SQL
- Added:
- 8/9/2019
- Last Updated:
- 6/16/2020
Operations
Data Inputs & Outputs
Scaffolding
Inputs
Outputs
Publications
Kockel L, Griffin C, Ahmed Y, Fidelak L, Rajan A, Gould EP, Haigney M, Ralston B, Tercek RJ, Galligani L, Rao S, Huq L, Bhargava HK, Dooner AC, Lemmerman EG, Malusa RF, Nguyen TH, Chung JS, Gregory SM, Kuwana KM, Regenold JT, Wei A, Ashton J, Dickinson P, Martel K, Cai C, Chen C, Price S, Qiao J, Shepley D, Zhang J, Chalasani M, Nguyen K, Aalto A, Kim B, Tazawa-Goodchild E, Sherwood A, Rahman A, Wu SYC, Lotzkar J, Michaels S, Aristotle H, Clark A, Gasper G, Xiang E, Schlör FL, Lu M, Haering K, Friberg J, Kuwana A, Lee J, Liu A, Norton E, Hamad L, Lee C, Okeremi D, diTullio H, Dumoulin K, Chi SYG, Derossi GS, Horowitch RE, Issa EC, Le DT, Morales BC, Noori A, Shao J, Cho S, Hoang MN, Johnson IM, Lee KC, Lee M, Madamidola EA, Schmitt KE, Byan G, Park T, Chen J, Monovoukas A, Kang MJ, McGowan T, Walewski JJ, Simon B, Zu SJ, Miller GP, Fitzpatrick KB, Lantz N, Fox E, Collette J, Kurtz R, Duncan C, Palmer R, Rotondo C, Janicki E, Chisholm T, Rankin A, Park S, Kim SK. An Interscholastic Network To Generate LexA Enhancer Trap Lines in <i>Drosophila</i>. G3 Genes|Genomes|Genetics. 2019;9(7):2097-2106. doi:10.1534/g3.119.400105. PMID:31040111. PMCID:PMC6643891.