TCGenerators

TCGenerators is a Python software tool that generates all possible binary tree-child (BTC) networks with a given number of leaves. BTC networks are a subclass of phylogenetic networks that generalize phylogenetic trees by allowing the modeling of reticulate evolution events.

The tool uses recursive reduction/augmentation operations to efficiently generate these networks, extending and generalizing similar operations for phylogenetic trees. These operations are biologically relevant and can also be used to extend the evolutionary history of a set of sequences represented by a BTC network to include a new sequence. The recursive nature of the solution provides an upper bound on the number of such networks through a recurrence relation.

Topic

Phylogenetics;Molecular interactions, pathways and networks

Detail

  • Operation: Phylogenetic tree generation (consensus);Phylogenetic tree bootstrapping;Phylogenetic tree reconstruction

  • Software interface: Command-line user interface

  • Language: Python

  • License: Not stated

  • Cost: Free of charge

  • Version name: -

  • Credit: Spanish Ministry of Science, Innovation and Universities, European Regional Development Fund.

  • Input: -

  • Output: -

  • Contact: Gabriel Cardona gabriel.cardona@uib.es

  • Collection: -

  • Maturity: -

Publications

Download and documentation


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