TITAN
TITAN generates and manipulates electric fields in biological systems to quantify intrinsic and applied electrostatic effects on enzymatic reactivity (PMID: 31568581).
Key Features:
- Electric Field Generation: Creates a range of external electric fields to probe their influence on biological systems.
- Quantification of Local Electric Fields: Quantifies intrinsic electric fields in proteins and other biomolecules using Coulomb's Law.
- Integration with Computational Methods: Supports coupling to quantum mechanics (QM), molecular mechanics (MM), QM/MM hybrid methods, and molecular dynamics simulations.
Scientific Applications:
- Enzymatic Reactivity Analysis: Elucidates the role of intrinsic and external electric fields in enzymatic reactions.
- Cytochrome P450 OleT_JE Studies: Applied to cytochrome P450 OleT_JE to study hydrogen transfer reactions (PMID: 31568581).
- Protein Matrix Effects: Demonstrates that the protein matrix in P450 OleT_JE acts as a moderate catalyst for hydrogen transfer.
- Electric Field Modulation: Shows that an oriented external electric field along the Fe─O bond in compound I significantly alters the reaction barrier, indicating modulation of enzymatic activity.
- Spin Density Correlation: Relates observed catalytic or inhibitory effects to changes in the calculated spin density on the oxygen atom.
Methodology:
Models and quantifies electric fields using Coulomb's Law and integrates those field calculations with QM, MM, QM/MM and molecular dynamics simulations.
Topics
Details
- Added:
- 1/9/2020
- Last Updated:
- 12/28/2020
Operations
Publications
Stuyver T, Huang J, Mallick D, Danovich D, Shaik S. TITAN: A Code for Modeling and Generating Electric Fields—Features and Applications to Enzymatic Reactivity. Journal of Computational Chemistry. 2019;41(1):74-82. doi:10.1002/jcc.26072. PMID:31568581.
DOI: 10.1002/JCC.26072
PMID: 31568581
Funding: - Fonds Wetenschappelijk Onderzoek: 1203419N
- Israel Science Foundation: ISF 520/18