TITINdb
TITINdb provides analysis and interpretation of titin non-synonymous single nucleotide variants (nsSNVs), mapping variants to domain structures across titin's 363 coding exons and delivering computational impact predictions to support variant interpretation.
Key Features:
- Comprehensive data integration: Integrates titin structural domains, variant data, sequence details, and isoform variations to contextualize nsSNVs (non-synonymous single nucleotide variants).
- Domain mapping across 363 coding exons: Maps nsSNVs to specific titin domain structures and locations within the 363 coding exons to address challenges of titin's large size.
- Pre-computed impact predictions: Provides pre-calculated computational predictions of the potential functional impacts of nsSNVs on titin.
Scientific Applications:
- Variant classification: Supports distinguishing pathogenic from non-pathogenic titin nsSNVs to inform genetic interpretation.
- Muscular disorder research: Enables investigation of titin variant contributions to conditions such as cardiomyopathies and muscular dystrophies.
- Precision/clinical genomics: Facilitates identification of patient-specific titin mutations for downstream translational or therapeutic studies.
Methodology:
Integration of diverse datasets describing titin's genetic and structural properties and application of computational predictions to assess the functional impact of nsSNVs within titin's domain architecture.
Topics
Details
- License:
- Unlicense
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- web application
- Operating Systems:
- Linux, Windows, Mac
- Added:
- 7/7/2019
- Last Updated:
- 11/24/2024
Operations
Publications
Laddach A, Gautel M, Fraternali F. TITINdb—a computational tool to assess titin’s role as a disease gene. Bioinformatics. 2017;33(21):3482-3485. doi:10.1093/bioinformatics/btx424. PMID:29077808. PMCID:PMC5860166.
PMID: 29077808
PMCID: PMC5860166
Funding: - British Heart Foundation: CH/08/001, RE/13/2/30182, RG/15/8/31480
- Biotechnology and Biological Sciences Research Council: BB/H018409/1
Documentation
Downloads
- Downloads pagehttp://fraternalilab.kcl.ac.uk/TITINdb/downloads/