TSDD

TSDD generates publication-quality images illustrating transcript structures and associated domains from GFF/GFF3 or BED annotations.

Key Features:

• Input Compatibility: Accepts GFF/GFF3 and BED files to produce visualizations of transcript structures.
• Visualization Output: Produces publication-quality graphical representations of transcript structures and associated domains.
• Pre-loaded Data for Model Organisms: Includes pre-loaded General Feature Format (GFF) files from several model organisms.
• Locus ID Mapping: Maps locus IDs of specific transcripts to pre-loaded GFF files to generate corresponding visual representations.

Scientific Applications:

• Evolutionary Analysis: Enables examination of DNA-binding domains across species to assess evolutionary relationships and functional conservation.
• Predictive Function Modeling: Supports prediction of gene function and regulatory features by visualizing transcript structures and domain architecture.

Methodology:

Converts input GFF/GFF3 or BED files into graphical representations and integrates pre-loaded genomic GFF data for model organisms, using locus ID mapping to locate specific transcripts.