WAVES
WAVES provides a platform to integrate and expose bioinformatics tools and services and to enable their execution on diverse computational environments such as Galaxy instances.
Key Features:
- Access methods: Exposes services via dedicated web pages, embeddable web forms, and a RESTful web services API for remote application access.
- Galaxy integration: Interfaces with Galaxy instances to execute Galaxy-managed tools and workflows as services.
- Service automation: Automates the availability and exposure of bioinformatics services across platforms and environments.
- Implementation: Implemented as a Django application written in Python.
- Reusability and portability: Packaged as a reusable web application intended for deployment of diverse bioinformatic software services.
Scientific Applications:
- Service deployment: Deploys bioinformatics tools and software as remotely accessible services.
- Workflow integration: Enables remote applications and workflows to invoke bioinformatics services via a RESTful API.
- Scalable computation: Runs analyses on external computational environments such as Galaxy instances to scale bioinformatics computations.
Methodology:
Implemented in Django (Python); exposes services through web pages, embeddable web forms, and a RESTful web services API; integrates with Galaxy instances to execute computations.
Topics
Details
- License:
- GPL-3.0
- Maturity:
- Emerging
- Cost:
- Free of charge
- Tool Type:
- api, web application
- Operating Systems:
- Linux
- Programming Languages:
- Python
- Added:
- 1/21/2020
- Last Updated:
- 11/24/2024
Operations
Data Inputs & Outputs
Service invocation
Publications
Chakiachvili M, Milanesi S, Arigon Chifolleau A, Lefort V. WAVES: a web application for versatile enhanced bioinformatic services. Bioinformatics. 2018;35(1):140-142. doi:10.1093/bioinformatics/bty639. PMID:30052762.
PMID: 30052762
Documentation
User manual
http://waves-core.readthedocs.io/Installation instructions
https://waves-core.readthedocs.io/en/latest/installation.htmlDownloads
- Source codehttps://github.com/lirmm/waves-core/releases