a4Reporting

a4Reporting generates structured reports summarizing analyses of high-throughput genomic data within the R and Bioconductor ecosystem.


Key Features:

  • Integration with Bioconductor: Part of the Bioconductor project and leverages the Bioconductor ecosystem of interoperable packages for genomics and molecular biology research.
  • Interoperability: Works with other Bioconductor packages to incorporate diverse datasets and analytical methods into reporting workflows.
  • Reporting for high-throughput genomic data: Provides functions for generating reports that present results and summaries from high-throughput genomic analyses.
  • Collection membership: Implements reporting functionality as a component of the "a4" collection of packages.

Scientific Applications:

  • Genomic Data Analysis: Supports presentation of results from gene expression analysis, variant calling, and other high-throughput genomic data analyses.

Methodology:

Implemented in R and leveraging Bioconductor interoperability and the statistical programming capabilities of R; maintained under continuous automated testing and formal Bioconductor review processes.

Topics

Collections

Details

License:
GPL-3.0
Tool Type:
command-line tool, library
Operating Systems:
Linux, Windows, Mac
Programming Languages:
R
Added:
1/17/2017
Last Updated:
11/25/2024

Operations

Publications

Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M. Orchestrating high-throughput genomic analysis with Bioconductor. Nature Methods. 2015;12(2):115-121. doi:10.1038/nmeth.3252. PMID:25633503. PMCID:PMC4509590.

Documentation

Downloads

Links