abmR
abmR implements agent-based modeling in R to simulate continental-scale animal movement using Ornstein-Uhlenbeck (OU) stochastic movement processes.
Key Features:
- Movement Functions: Two distinct movement functions grounded in the Ornstein-Uhlenbeck (OU) process for stochastic simulation of animal trajectories.
- Theoretical Foundation: Built on an OU-based stochastic framework to provide spatially explicit agent-based movement models.
- Illustrative Examples: Example simulations using two distinct populations that demonstrate package functionalities and simulation outputs.
- Environmental Variables (future): Planned ability to specify multiple environmental factors to modulate agent movement.
- Agent Interactions (future): Planned functionality to model interactions between agents for studying social dynamics and competition.
- Integration with Other Tools (future): Planned integration with other R packages focused on movement modeling.
Scientific Applications:
- Ecology: Simulate animal–environment interactions to inform conservation, habitat management, and movement-ecology studies.
- Disease Ecology: Provide a simulation framework applicable to disease ecology, including modeling potential disease spread among animal populations.
- Interactions Between Agents: Enable investigation of social behaviors and competition within and across species via simulated agent interactions.
Methodology:
Movement trajectories are generated using the Ornstein-Uhlenbeck (OU) stochastic process, with support for incorporating environmental variables into simulations.
Topics
Details
- Tool Type:
- library
- Programming Languages:
- R
- Added:
- 12/10/2021
- Last Updated:
- 12/10/2021
Operations
Publications
Gochanour B, Fernández-López J, Contina A. abmR: an R package for agent-based model analysis of large-scale movements across taxa. Unknown Journal. 2021. doi:10.1101/2021.09.15.460374.
Documentation
User manual
https://www.bengochanour.com/abmr