ABOSA

ABOSA analyzes blood oxygen saturation (SpO₂) signals to detect desaturation and recovery events and compute event-specific metrics for sleep apnea research.


Key Features:

  • Automatic Detection: Automatically identifies desaturation and recovery events within SpO₂ signals.
  • Comprehensive Metrics: Calculates event-specific metrics including Oxygen Desaturation Index (ODI) and Desaturation Severity (DesSev).
  • Batch Analysis: Supports batch processing of large SpO₂ datasets for high-throughput analysis.
  • EDF Input Support: Processes EDF (European Data Format) files commonly used for polysomnography.
  • MATLAB Implementation: Implemented in MATLAB as the software development environment.
  • Sophisticated Parameters: Computes additional signal-based and novel parameters for detailed characterization of desaturation events.

Scientific Applications:

  • Sleep Apnea Severity Assessment: Enables quantification of sleep apnea severity using ODI, DesSev, and other desaturation-derived metrics.
  • Epidemiological Studies: Applicable to large-scale analyses of population-level oxygen desaturation patterns.
  • Clinical Trials: Supports analysis of SpO₂-derived endpoints in clinical studies of respiratory disorders.
  • Validation and Method-Comparison Studies: Validated against manual scorings in Kuopio (n = 1981) and Loewenstein (n = 930) datasets using second-by-second Matthew's Correlation Coefficients (MCC) and median parameter differences, and shown comparable desaturation detection to Noxturnal and Profusion.

Methodology:

Implemented in MATLAB; processes EDF files; algorithm automatically detects desaturation and recovery phases in the SpO₂ signal and calculates multiple event-specific parameters.

Topics

Details

License:
Other
Cost:
Free of charge
Tool Type:
desktop application
Operating Systems:
Mac, Linux, Windows
Programming Languages:
MATLAB
Added:
10/26/2022
Last Updated:
11/24/2024

Operations

Publications

Karhu T, Leppänen T, Töyräs J, Oksenberg A, Myllymaa S, Nikkonen S. ABOSA – Freely available automatic blood oxygen saturation signal analysis software: Structure and validation. Computer Methods and Programs in Biomedicine. 2022;226:107120. doi:10.1016/j.cmpb.2022.107120. PMID:36152624.