ABrainVis

ABrainVis visualizes complex brain imaging datasets on Android devices to support examination of white matter diffusion tractographies, segmented fiber bundles, MRI 3D images (volumes and slices), and mesh-based anatomical structures.


Key Features:

  • 3D Visualization: Renders white matter diffusion tractographies as 3D fibers for spatial examination of neural pathways.
  • Segmented Fiber Bundles: Supports visualization of segmented fiber bundles to display specific neural tracts and their anatomical relationships.
  • MRI Volume Rendering: Displays MRI 3D images as rendered volumes and slices for assessment of volumetric anatomy.
  • Mesh Visualization: Integrates mesh data to represent brain surface anatomy alongside imaging data.
  • Scalable Tractography Handling: Handles medium to large tractography datasets with performance optimizations for Android devices.

Scientific Applications:

  • Neuroanatomical Studies: Combines tractography, MRI volumes, and meshes to support analysis of brain structure and connectivity.
  • Clinical Diagnostics: Aids visualization relevant to diagnosing conditions such as brain tumors and vascular abnormalities.
  • Educational Purposes: Provides visual resources for teaching brain anatomy, fiber tracts, and imaging-based anatomical context.

Methodology:

Renders diffusion tractographies as 3D fibers, displays MRI 3D images as volumes and slices, integrates mesh data, and optimizes processing to handle medium-to-large tractography datasets on Android devices.

Topics

Details

License:
GPL-3.0
Cost:
Free of charge
Programming Languages:
Java
Added:
11/15/2021
Last Updated:
11/15/2021

Operations

Publications

Osorio I, Guevara M, Bonometti D, Carrasco D, Descoteaux M, Poupon C, Mangin J, Hernández C, Guevara P. ABrainVis: an android brain image visualization tool. BioMedical Engineering OnLine. 2021;20(1). doi:10.1186/s12938-021-00909-0. PMID:34325693. PMCID:PMC8323223.

PMID: 34325693
PMCID: PMC8323223
Funding: - ANID: Basal Project FB0001, Basal Project FB0008, FONDECYT 1190701 - Horizon 2020: 604102 (HBP SGA1)., 785907 (HBP SGA2), 945539 (HBP SGA3)