ACP-MHCNN

ACP-MHCNN predicts anticancer peptides by employing a multi-headed convolutional neural network that integrates sequence, physicochemical, and evolutionary features for computational identification of anticancer peptides.


Key Features:

  • Multi-Headed Deep Convolutional Neural Network Architecture: Employs a multi-headed deep convolutional neural network to extract and integrate discriminative features from multiple numerical peptide representations.
  • Feature Extraction: Leverages sequence, physicochemical, and evolutionary-based numerical representations to capture discriminative peptide features while maintaining a restrained parameter overhead.
  • Performance Superiority: Validated using cross-validation and independent datasets, demonstrating improvements over prior models in accuracy (+6.3%), sensitivity (+8.6%), specificity (+3.7%), precision (+4.0%), and Matthews Correlation Coefficient (+0.20).

Scientific Applications:

  • Anticancer peptide identification: Provides computational screening to identify candidate anticancer peptides and accelerate discovery of potential anticancer therapeutics.

Methodology:

Implements deep learning with a multi-headed convolutional neural network to integrate sequence, physicochemical, and evolutionary numerical peptide representations and uses cross-validation and independent-dataset validation.

Topics

Details

Programming Languages:
Python
Added:
1/18/2021
Last Updated:
1/19/2021

Operations

Publications

Ahmed S, Muhammod R, Adilina S, Khan ZH, Shatabda S, Dehzangi A. ACP-MHCNN: An Accurate Multi-Headed Deep-Convolutional Neural Network to Predict Anticancer peptides. Unknown Journal. 2020. doi:10.1101/2020.09.25.313668.