AcrHub
AcrHub provides an integrated database and analysis platform for anti-CRISPR (Acr) proteins, compiling experimentally validated and predicted Acr sequences to support discovery, comparative analysis, and evolutionary study of Acr-mediated inhibition of CRISPR-Cas systems.
Key Features:
- Comprehensive Database: Catalogs 339 non-redundant experimentally validated anti-CRISPR proteins and over 70,000 predicted Acrs derived from genomic sequence data across diverse prokaryotic organisms and their viruses.
- Predictive Capabilities: Integrates predictive algorithms to identify potential Acr proteins from genomic sequence data.
- Similarity Analysis: Performs sequence and structural similarity comparisons among Acr proteins to aid identification of novel Acrs.
- Phylogenetic Analysis: Infers evolutionary relationships among Acr proteins to explore their origins and diversification.
- Homology Network Analysis: Constructs homology networks linking known and predicted Acrs to assess functional conservation and divergence.
Scientific Applications:
- Gene Editing Research: Supports studies of Acrs to inform control of CRISPR-Cas activity in gene editing applications.
- Phage Therapy Development: Provides data on Acr proteins relevant to bacterial resistance and phage–host interactions for phage therapy research.
- Microbial Evolution Studies: Enables evolutionary analyses of Acr distribution and diversification across prokaryotes and their viruses.
Methodology:
Combines experimentally validated Acr sequences with predictive modeling and applies sequence/structural similarity analysis, phylogenetic analysis, and homology network construction.
Topics
Details
- Tool Type:
- web application
- Added:
- 1/18/2021
- Last Updated:
- 1/21/2021
Operations
Publications
Wang J, Dai W, Li J, Li Q, Xie R, Zhang Y, Stubenrauch C, Lithgow T. AcrHub: an integrative hub for investigating, predicting and mapping anti-CRISPR proteins. Nucleic Acids Research. 2020;49(D1):D630-D638. doi:10.1093/nar/gkaa951. PMID:33137193. PMCID:PMC7779044.
Documentation
Downloads
- Downloads pagehttp://pacrispr.erc.monash.edu/AcrHub/download.jsp