AI-biopsy
AI-biopsy integrates MR imaging and histopathological labels with deep learning to classify prostate lesions and predict cancer risk.
Key Features:
- Pathology-Radiology Fusion: Fuses MR images with histopathological labels, including Gleason Score/Grade Group, to enhance diagnostic signal.
- Deep Learning Models: Employs deep learning models trained on MR images from 400 patients (228 in-house, 172 external) to classify benign versus malignant lesions and high- versus low-risk tumors.
- Performance Metrics: Reports areas under the ROC curve of 0.89 for cancer versus benign classification and 0.78 for high- versus low-risk classification, and provides negative predictive value, positive predictive value, specificity, sensitivity, accuracy, and Cohen's kappa.
- Class Activation Mapping: Applies class activation mapping to highlight MR image regions that contribute to model predictions.
Scientific Applications:
- Non-invasive diagnosis: Enables prostate cancer assessment from MR images labeled with histopathology to support non-invasive diagnostic evaluation.
- Risk stratification: Distinguishes high-risk from low-risk tumors to inform clinical decision-making and treatment planning.
- Biopsy reduction potential: Provides data-driven cancer risk assessments from MR images that can potentially reduce unnecessary biopsies.
Methodology:
Uses MRI datasets from 400 patients (228 in-house, 172 external); MR images were reviewed by radiologists and labeled with biopsy results including Gleason Score/Grade Group under pathologist supervision; deep learning models were trained to classify benign/malignant and high/low-risk categories and evaluated using AUC and other performance metrics, with class activation mapping used for visualization.
Topics
Details
- License:
- MIT
- Tool Type:
- api, web application
- Programming Languages:
- Python
- Added:
- 6/14/2021
- Last Updated:
- 11/24/2024
Operations
Publications
Khosravi P, Lysandrou M, Eljalby M, Li Q, Kazemi E, Zisimopoulos P, Sigaras A, Brendel M, Barnes J, Ricketts C, Meleshko D, Yat A, McClure TD, Robinson BD, Sboner A, Elemento O, Chughtai B, Hajirasouliha I. A Deep Learning Approach to Diagnostic Classification of Prostate Cancer Using Pathology–Radiology Fusion. Journal of Magnetic Resonance Imaging. 2021;54(2):462-471. doi:10.1002/jmri.27599. PMID:33719168. PMCID:PMC8360022.
Downloads
- Container filehttps://hub.docker.com/r/eipm/ai-biopsy