AI-Driver

AI-Driver predicts the driver status of somatic missense mutations in cancer genomes by using an ensemble classifier that integrates 23 pathogenicity features to distinguish drivers from passengers.


Key Features:

  • Ensemble Methodology: Integrates multiple predictive models to assess driver status of somatic missense mutations.
  • Pathogenicity Feature Integration: Utilizes 23 distinct pathogenicity features to capture multifaceted mutation impacts.
  • Cancer-Specific Predictions: Produces mutation-level predictions tailored to personal cancer genomes.
  • Benchmark Performance: Demonstrated superior and stable performance across four independent benchmarks.
  • Pre-computed Variant Scores: Includes pre-computed AI-Driver scores for all possible human missense variants.

Scientific Applications:

  • Driver Mutation Identification: Prioritizes somatic missense mutations as drivers or passengers in personal cancer genomes and exome sequencing data.
  • Therapeutic Target Discovery: Supports identification of candidate driver alterations that may inform targeted therapy development.
  • Tumor Biomarker Prediction: Contributes to prediction of tumor biomarkers applicable to diagnostics and monitoring, including liquid biopsy approaches.

Methodology:

AI-Driver uses an ensemble learning approach that combines multiple predictive models and integrates 23 pathogenicity features to classify somatic missense mutations as drivers or passengers.

Topics

Details

Tool Type:
command-line tool, web application
Programming Languages:
Python
Added:
3/19/2021
Last Updated:
4/11/2021

Operations

Publications

Wang H, Wang T, Zhao X, Wu H, You M, Sun Z, Mao F. AI-Driver: an ensemble method for identifying driver mutations in personal cancer genomes. NAR Genomics and Bioinformatics. 2020;2(4). doi:10.1093/nargab/lqaa084. PMID:33575629. PMCID:PMC7671397.

PMID: 33575629
PMCID: PMC7671397
Funding: - National Natural Science Foundation of China: 31872237 - National Key Research and Development Program of China: 2016YFC0900400 - National High-tech Research and Development Program: 2012AA02A210

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