AI-Driver
AI-Driver predicts the driver status of somatic missense mutations in cancer genomes by using an ensemble classifier that integrates 23 pathogenicity features to distinguish drivers from passengers.
Key Features:
- Ensemble Methodology: Integrates multiple predictive models to assess driver status of somatic missense mutations.
- Pathogenicity Feature Integration: Utilizes 23 distinct pathogenicity features to capture multifaceted mutation impacts.
- Cancer-Specific Predictions: Produces mutation-level predictions tailored to personal cancer genomes.
- Benchmark Performance: Demonstrated superior and stable performance across four independent benchmarks.
- Pre-computed Variant Scores: Includes pre-computed AI-Driver scores for all possible human missense variants.
Scientific Applications:
- Driver Mutation Identification: Prioritizes somatic missense mutations as drivers or passengers in personal cancer genomes and exome sequencing data.
- Therapeutic Target Discovery: Supports identification of candidate driver alterations that may inform targeted therapy development.
- Tumor Biomarker Prediction: Contributes to prediction of tumor biomarkers applicable to diagnostics and monitoring, including liquid biopsy approaches.
Methodology:
AI-Driver uses an ensemble learning approach that combines multiple predictive models and integrates 23 pathogenicity features to classify somatic missense mutations as drivers or passengers.
Topics
Details
- Tool Type:
- command-line tool, web application
- Programming Languages:
- Python
- Added:
- 3/19/2021
- Last Updated:
- 4/11/2021
Operations
Publications
Wang H, Wang T, Zhao X, Wu H, You M, Sun Z, Mao F. AI-Driver: an ensemble method for identifying driver mutations in personal cancer genomes. NAR Genomics and Bioinformatics. 2020;2(4). doi:10.1093/nargab/lqaa084. PMID:33575629. PMCID:PMC7671397.
PMID: 33575629
PMCID: PMC7671397
Funding: - National Natural Science Foundation of China: 31872237
- National Key Research and Development Program of China: 2016YFC0900400
- National High-tech Research and Development Program: 2012AA02A210