AIDE
AIDE performs annotation-efficient deep learning for medical image segmentation to enable accurate segmentation from sparse, noisy, or absent target-domain annotations.
Key Features:
- Annotation Efficiency: Reduces dependency on large volumes of high-quality manual annotations by learning effectively from sparse annotation sets.
- Handling Imperfect Data: Manages datasets with scarce, noisy, or absent target domain-specific annotations to support real-world clinical data conditions.
- Performance Superiority: Demonstrates superior performance versus conventional fully supervised models on open datasets characterized by limited or noisy annotations.
- Real-life Application: Validated on breast tumor segmentation using three datasets comprising 11,852 breast images from three medical centers, achieving segmentation comparable to fully supervised models and independent radiologists with only 10% of typical training annotations.
- Efficiency in Expert Label Utilization: Improves the efficiency of expert label usage by approximately tenfold.
Scientific Applications:
- Oncology: Supports tumor segmentation and related quantitative analysis with limited expert annotations.
- Neurology: Enables segmentation tasks in neurological imaging when high-quality annotations are scarce.
- Radiology: Facilitates radiological image segmentation to aid diagnostic workflows and treatment planning under annotation constraints.
- Large-scale Studies and Tool Development: Supports development of diagnostic tools, personalized treatment plans, and large-scale medical studies where annotation resources are limited.
Methodology:
Employs advanced deep learning techniques with an architecture designed to learn robustly from imperfect data and incorporates strategies to mitigate the impact of annotation noise and scarcity.
Topics
Details
- License:
- LGPL-2.1
- Tool Type:
- workflow
- Programming Languages:
- Python
- Added:
- 3/28/2022
- Last Updated:
- 3/28/2022
Operations
Publications
Wang S, Li C, Wang R, Liu Z, Wang M, Tan H, Wu Y, Liu X, Sun H, Yang R, Liu X, Chen J, Zhou H, Ben Ayed I, Zheng H. Annotation-efficient deep learning for automatic medical image segmentation. Nature Communications. 2021;12(1). doi:10.1038/s41467-021-26216-9. PMID:34625565. PMCID:PMC8501087.
Links
Issue tracker
https://github.com/lich0031/AIDE/issues