Allele frequency net

Allele frequency net provides allele frequency data for immune-related genes across global human populations to support population genetics, transplantation, disease association, and immunogenetics research.


Key Features:

  • Extensive Data Collection: Frequency data from 1,133 distinct populations representing 608,813 individuals covering polymorphic regions including human leukocyte antigens (HLA), killer-cell immunoglobulin-like receptors (KIRs), major histocompatibility complex Class I chain-related genes, and cytokine gene polymorphisms.
  • Demographic Metadata: Associates demographic information with frequency records derived from population studies.
  • Bioinformatics Tools: Provides computational tools to analyze the occurrence and distribution of immune gene variants globally.

Scientific Applications:

  • Clinical Applications: Supports histocompatibility testing, immunological research, epidemiology studies, and pharmacogenetics by providing allele frequency data for immune genes.
  • Population Genetics: Enables studies of human diversity and evolutionary biology through comparison of immune gene variant distributions across populations.
  • Disease Association Studies: Facilitates identification of genetic associations with diseases by providing detailed allele frequency information across populations.

Methodology:

Allele frequency data were collected from published population studies and integrated across polymorphic regions of immune-related genes.

Topics

Details

Tool Type:
web application
Operating Systems:
Linux, Windows, Mac
Programming Languages:
JavaScript
Added:
3/30/2017
Last Updated:
11/24/2024

Operations

Publications

Gonzalez-Galarza FF, Christmas S, Middleton D, Jones AR. Allele frequency net: a database and online repository for immune gene frequencies in worldwide populations. Nucleic Acids Research. 2010;39(Database):D913-D919. doi:10.1093/nar/gkq1128. PMID:21062830. PMCID:PMC3013710.