Alloscore
Alloscore predicts binding affinities of allosteric ligand-protein interactions to support identification and optimization of allosteric modulators for drug discovery.
Key Features:
- Predictive Capability: Alloscore employs computational methods to predict binding affinities between allosteric ligands and proteins.
- Performance in Allosteric Binding Description: The tool demonstrates strong performance in characterizing allosteric binding interactions.
- Application in Virtual Screening and Structural Optimization: Alloscore enables prioritization of compounds in virtual screening and aids structural optimization of allosteric agonists and antagonists.
Scientific Applications:
- Allosteric modulator discovery: Supports discovery of allosteric modulators by predicting binding affinities and prioritizing candidate compounds.
- Virtual screening prioritization: Facilitates compound ranking in virtual screening campaigns targeting allosteric sites.
- Optimization for efficacy and safety: Aids structural optimization of allosteric agonists and antagonists to improve efficacy and specificity and to address limitations of orthosteric drugs such as off-target effects and toxicity.
Methodology:
Computational algorithms model binding affinities from structural data of ligand-protein complexes; models are trained and validated using known allosteric interactions.
Topics
Collections
Details
- Tool Type:
- web application
- Operating Systems:
- Linux, Windows, Mac
- Added:
- 8/3/2017
- Last Updated:
- 3/26/2019
Operations
Data Inputs & Outputs
Protein binding site prediction
Publications
Li S, et al. Alloscore: a method for predicting allosteric ligand-protein interactions. Bioinformatics. 2016; 32:1574-6. doi: 10.1093/bioinformatics/btw036
PMID: 26803160