AMAT

AMAT performs multivariate association testing of high-dimensional microbiome data by pooling microbial features into groups and applying distance correlation learning and adaptive testing within a generalized linear model framework to detect associations with health outcomes.


Key Features:

  • High-Dimensional Data Handling: Pools individual microbial features into groups for multivariate association analysis to capture complex interactions within the microbiome.
  • Feature Selection and Noise Reduction: Uses distance correlation learning for feature selection and to reduce noise accumulation in high-dimensional datasets.
  • Adaptive Statistical Testing: Performs association testing within a flexible generalized linear model framework that accommodates various outcome types and distributional assumptions.
  • Robustness and Power: Demonstrates, in simulation studies and real-world applications, preservation of the correct type I error rate while often improving statistical power relative to existing methods.

Scientific Applications:

  • Microbiome association studies: Investigates associations between microbial communities and health outcomes, including gut microbiota-linked conditions such as inflammatory bowel disease, obesity, and diabetes.
  • Biomarker and target discovery: Identifies potential microbial biomarkers or therapeutic targets within the microbiome through multivariate association analysis.

Methodology:

Pools microbial features into groups, applies distance correlation learning for feature selection and noise reduction, and conducts adaptive association testing within a generalized linear model framework.

Topics

Details

License:
Not licensed
Cost:
Free of charge
Tool Type:
command-line tool, workflow
Operating Systems:
Mac, Linux, Windows
Programming Languages:
R
Added:
6/8/2022
Last Updated:
6/8/2022

Operations

Publications

Banerjee K, Chen J, Zhan X. Adaptive and powerful microbiome multivariate association analysis via feature selection. NAR Genomics and Bioinformatics. 2022;4(1). doi:10.1093/nargab/lqab120. PMID:35047812. PMCID:PMC8759573.