AMAT
AMAT performs multivariate association testing of high-dimensional microbiome data by pooling microbial features into groups and applying distance correlation learning and adaptive testing within a generalized linear model framework to detect associations with health outcomes.
Key Features:
- High-Dimensional Data Handling: Pools individual microbial features into groups for multivariate association analysis to capture complex interactions within the microbiome.
- Feature Selection and Noise Reduction: Uses distance correlation learning for feature selection and to reduce noise accumulation in high-dimensional datasets.
- Adaptive Statistical Testing: Performs association testing within a flexible generalized linear model framework that accommodates various outcome types and distributional assumptions.
- Robustness and Power: Demonstrates, in simulation studies and real-world applications, preservation of the correct type I error rate while often improving statistical power relative to existing methods.
Scientific Applications:
- Microbiome association studies: Investigates associations between microbial communities and health outcomes, including gut microbiota-linked conditions such as inflammatory bowel disease, obesity, and diabetes.
- Biomarker and target discovery: Identifies potential microbial biomarkers or therapeutic targets within the microbiome through multivariate association analysis.
Methodology:
Pools microbial features into groups, applies distance correlation learning for feature selection and noise reduction, and conducts adaptive association testing within a generalized linear model framework.
Topics
Details
- License:
- Not licensed
- Cost:
- Free of charge
- Tool Type:
- command-line tool, workflow
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- R
- Added:
- 6/8/2022
- Last Updated:
- 6/8/2022
Operations
Publications
Banerjee K, Chen J, Zhan X. Adaptive and powerful microbiome multivariate association analysis via feature selection. NAR Genomics and Bioinformatics. 2022;4(1). doi:10.1093/nargab/lqab120. PMID:35047812. PMCID:PMC8759573.